Pairwise Alignments

Query, 420 a.a., tricarboxylate porin (from data) from Pseudomonas stutzeri RCH2

Subject, 447 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

 Score =  238 bits (608), Expect = 2e-67
 Identities = 145/435 (33%), Positives = 224/435 (51%), Gaps = 38/435 (8%)

Query: 12  ARLALAVAAASLAPLAQAA--FIEDSSATLQTQNIYLNRDFREGS--GQSKREEWTQGFI 67
           A L    A A  A LAQ+   F++ ++  + ++N YLN D+R  +  G+S ++EW QGFI
Sbjct: 19  ALLTSGTAPAMAAELAQSTPGFLDGATLQVLSRNFYLNNDYRAPTPAGKSYKQEWAQGFI 78

Query: 68  LDVQSGFTEGTVGVGLDALGMLGIKLDSGGGRTGTDLLPVHDDGSTPDEFSRLGLTAKAK 127
              +SGFT GT+GVG+DA G LG+KLD G G +GT LLP+ ++G + D +S  G   K  
Sbjct: 79  ASFESGFTPGTIGVGIDAHGFLGLKLDGGKGHSGTGLLPLDENGRSEDHYSSAGGALKFN 138

Query: 128 IAETELRYGSHIPEMPVVKASDSRTLPQVFEGGTATSKDIEGLTLIGGRLDKVIDR-AST 186
            + T L  G    + PV   +D R  P+   G   +S++ EG+ L  G      ++ AST
Sbjct: 139 ASRTTLAVGEMTVQSPVFDTADKRLQPEYASGLLLSSREFEGVDLQAGHFSAFKNQDAST 198

Query: 187 NSQDLQLNNKNSRFAGAAEADHLTFAGAEYAFNKNLTGRYYYGELDDVYRQHFFGLLAVK 246
           +  D       S +        + F GA+    + L G  Y  EL D +RQ++  L A  
Sbjct: 199 SKGDF------SGYGATTRHGVIDFIGADLLSGQALGGALYASELSDTWRQYYANLHATV 252

Query: 247 PLTDNSALSADLRVMFSDDTGAANAGKIDNQAWNGMLGYSLGGHKVSLGYQQMRGDTGYA 306
                  L  D  +  + D G A AG ID  A++    Y       +L YQ++ GDT + 
Sbjct: 253 -----GELFLDGNLYHTRDDGKAIAGAIDTTAYSLSGKYRFNAQAFTLAYQKINGDTPFD 307

Query: 307 YIDGSDPFLVNFVQINDFANADERSWQARYDYNFAAMGIPGLTFLTRYVSG--------- 357
           ++ G   +L N ++  DF    ERSWQARYD +   +GIPGL+F+ RYV+G         
Sbjct: 308 FVGGDSIYLANSIKYADFNGPGERSWQARYDLDLGTLGIPGLSFMARYVTGRGIDGSHAP 367

Query: 358 ----------DNAEYN--GGSNGSEWERDIELKYVVQSGPLKNVAVRMRNAMFRSDFARD 405
                     D   Y+   G+    WERD++L Y+VQSGP K++++++ +   R++ ++ 
Sbjct: 368 QGGAYNPFDSDTGTYSPQQGAGARHWERDLDLHYIVQSGPAKDLSLQLSHVTHRANSSQG 427

Query: 406 ADE-NRLIVSYSLPI 419
            D+ +RL +    P+
Sbjct: 428 GDDIDRLYIVIQYPL 442