Pairwise Alignments

Query, 241 a.a., DNA polymerase III, epsilon subunit, Proteobacterial from Pseudomonas stutzeri RCH2

Subject, 247 a.a., DNA polymerase III subunit epsilon from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (633), Expect = 8e-71
 Identities = 133/240 (55%), Positives = 170/240 (70%), Gaps = 10/240 (4%)

Query: 2   RSVVLDTETTGM-----PVADGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAV 56
           R VVLDTETTGM     P  +GHRIIEIG VE+I R+LTGRH+HVYL+PDR++   AI V
Sbjct: 11  RIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEV 70

Query: 57  HGITNEFLVDKPRFRDVADEFFEFIKGAQLVIHNAAFDLGFINNEFALLGQQERADIAEH 116
           HGIT+EFL DKP ++DV +EF +FIKGA+LV HNA FD+GF++ EFA LG       ++ 
Sbjct: 71  HGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLG-GAIGKTSDF 129

Query: 117 CSVLDTLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTN 176
           C V DTL MA+   PG+RN+LD LC+RYG+DNS R LHGALLDAEILADV+L MTGGQT+
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189

Query: 177 LSLAGDGESSDGGRQQPTPIRRLPADRLRTRVLRASEEELAAHVARMAAIEKAAGATPLW 236
           L  +   ++S  G      ++R  ++R   +VL AS +EL AH  R+  + K+   T LW
Sbjct: 190 LQFSSVTQNS--GELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAKS--GTCLW 245