Pairwise Alignments

Query, 482 a.a., FOG: LysM repeat from Pseudomonas stutzeri RCH2

Subject, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

 Score =  348 bits (893), Expect = e-100
 Identities = 198/494 (40%), Positives = 298/494 (60%), Gaps = 32/494 (6%)

Query: 6   REQTRRATTPVAQEPIWLNDTTAIT--EHEDIWERIREGYKLQEHLDSNPRIEQQRLLLS 63
           R+    AT P  +      +  A+T  E +D+W+RI   +KL   +  +P ++ QR    
Sbjct: 45  RKPQTTATLPAGETESVEEERVALTPQEQDDVWQRIAMQFKLG--IPKDPSVDAQREWFL 102

Query: 64  SRPKSIEVVSERSSPFIHYIVERLEERDMPLELALLPIIESSYDPFAYSPAHAVGLWQFI 123
             P  ++ ++ R+ PF++ I E++E+R +PLEL LLPI+ESS+DPFAYS   A GLWQFI
Sbjct: 103 KNPGHLQAIASRAEPFLYLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFI 162

Query: 124 PSTGRHFNLRQTSWYDGRRDITASTNAALRYLSYLHGLFNGDWLLALAAYNAGEGTVSRA 183
            STG+ + L+Q  WYDGRRD+ A+T+AAL YL+ L+  F+GDW  A+AAYN+GEG V+RA
Sbjct: 163 SSTGKRYGLKQNFWYDGRRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARA 222

Query: 184 IERNQKLGLPTDYWNLPLPRETRDYVPKLLALSQLIQAPEAYGINLNPIANEPYFEVIAL 243
           I+ N+K G P D+++L LP+ET  YVPKL+AL+ +I   E YGI++  I N P    +  
Sbjct: 223 IKANKKAGKPIDFFSLDLPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDP 282

Query: 244 KQRMDLARVAKLADLDEDELYQLNPAFTRRITL-DGPQQLLVPMEKAEMLAANLALMKPQ 302
           K+++DLA  A+ A L   EL   NPA+ +  T  +GP QLL+P+EK E    NLA+ + +
Sbjct: 283 KEQLDLAIAARYAGLTVKELQSFNPAYNQWATAPNGPHQLLIPVEKVERF--NLAMEENR 340

Query: 303 DL-VDWQQYQVRAGDTLGVIANRHHLTVNIIRDVNRLKSDTLRVGQVLSLPTS-SDAKAS 360
              +   +Y+V++GDTL  IA++++ T  +I++ N++ S+ +RVG  L +PTS  D KA 
Sbjct: 341 GKGIKVVRYKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAY 400

Query: 361 RELLHAVARQPASTPR-----TYRVKTGDNLWDIAKAQRVSVRDLQRWNRLSGSQ-LKVG 414
              +     +  S PR     T+ V +G++LW IAK   V  + L +WN ++    L+ G
Sbjct: 401 ALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKG 460

Query: 415 QALFLQGPATRTPAKKDNSPT-------YYKVQKGDSLYQIAKRFNVQLTNLKTWNP-KG 466
           Q L +          KD+ PT        YKV+ GD+L  IA +F V+  ++  WN    
Sbjct: 461 QKLVIW---------KDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNS 511

Query: 467 TEVLRPGQLLTLYL 480
           T+ L+ GQ L LY+
Sbjct: 512 TQYLKAGQQLKLYV 525