Pairwise Alignments

Query, 609 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 565 a.a., oligopeptide-binding protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 98.6 bits (244), Expect = 6e-25
 Identities = 117/511 (22%), Positives = 205/511 (40%), Gaps = 74/511 (14%)

Query: 49  APKGGRIKLMASGTFDTLNPYTFKGTSPSATPGFLQYGISELNEPLMVGTGIYDPSGDEP 108
           A  GGRI + + G    L  +     S       L  G+   N  L +          EP
Sbjct: 58  AEDGGRIIMGSIGEPSNLISFLSSDASSHEVASQLYVGLLRYNRDLEI----------EP 107

Query: 109 ASSYGLIAESVEYSDNNSWVVFNLRKQARFHDGKPITAYDVAFSYRLLVKDGHP-QYRTN 167
            +     AES E  D    + F LRK  R+ DG  +TA DV F+Y+L++    P  Y  +
Sbjct: 108 WA-----AESYEVLDGGRLLRFKLRKGIRWQDGVELTADDVEFTYKLIIAPTTPTPYAGD 162

Query: 168 LQGVKRVDILNRHRIRFVFEQPDNPLLVMRLGELPVLPQHYWKNRDFKATTF-EPPLGSG 226
              V+      R+     +++P    L+  + +  ++P+H  + +D + T F   P+G+G
Sbjct: 163 FLAVQEFRKTGRYSFEVRYDKPFARSLISWMQD--IMPKHLLEGQDVRTTPFARKPVGAG 220

Query: 227 PYRITHVQPGRQVVFERVRNWWGAKLPVNQGKYNFNRVDVEFYRDSVVAFEAFKVAEFDF 286
           PY +   +PG ++V     +++       +G+ + + V      D+   F   K  + D 
Sbjct: 221 PYMLESWEPGTRLVLRANPDYF-------EGRPHIDEVVYRIIPDNATMFLELKAGKLDM 273

Query: 287 --YIEHQAKNWANGYEFPAMLRGDIIRAEIPHQIPTQTQALFMNSRRATFADQRVREALG 344
                 Q     +GY +    R           +      L  N +   FAD RVR A+ 
Sbjct: 274 MGLSPQQYLRQTDGYTWERDWRK-------YRYLSFGYTYLGYNLKHPFFADARVRRAIA 326

Query: 345 LMFDFEWTNRALFYGAYRRSESYYPNSDFTATGKPEGGEWLLLSPYRKQLPAKLFTEPFE 404
              D E   + +  G                 G  + G W+    Y  +L A  +     
Sbjct: 327 HAIDREGIIKGVLLG-----------QGVPTVGPYKPGTWV----YNDRLTAYSYDPAL- 370

Query: 405 LPRTDGRGIPRETLRRALGLLAEAGWKASDA-GLLNGAGQPLRFEILLVNPRLERVLQPY 463
                           A  +L EAGW+ +D  G+L+  G+P  F IL      +R+    
Sbjct: 371 ----------------AAEMLREAGWQDTDGDGILDREGRPFAFTILTNQGNDQRIKTAT 414

Query: 464 V--ENLARIGIQANLRTVDSAQY-KQRLDHYDYDMILMTLVQSLSPGIEQHLYFHSSQVD 520
           +    L  +GI+  +RTV+ A + K+ ++   +D ++  L  +++   + +  +HSS+ +
Sbjct: 415 IIQSQLKDVGIRVQIRTVEWAAFIKEFVNTGRFDAVI--LGWNITQDPDAYDVWHSSKAE 472

Query: 521 VKGGRNYAGVANPIIDDLIAKLLAAQTRDEQ 551
             GG N+ G  N  +D ++ K      +DE+
Sbjct: 473 -PGGLNFVGYRNAEVDAVLEKARRTFDQDER 502