Pairwise Alignments

Query, 357 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 360 a.a., peptide ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  483 bits (1244), Expect = e-141
 Identities = 236/360 (65%), Positives = 292/360 (81%), Gaps = 5/360 (1%)

Query: 1   MLAYIFRRLLLIIPTLFGILLINFIIIQAAPGGPVEQAIAKLEG-FEGATSRIAGGGSEV 59
           ML+YI RRLLL++PTL+ I+ INF IIQ APGGPVEQAIA+LEG   G   R  GGG EV
Sbjct: 1   MLSYILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEV 60

Query: 60  AVAG----TSYRGAQGLDPELVAEIERLYGFDKPPVERFWIMLSNYLRLDFGESFFRDAK 115
           A       + Y+G++GLDP++V EI R +GFDKP  ER++ ML +Y   +FGES FR   
Sbjct: 61  AAPTDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGD 120

Query: 116 VTDLIIEKMPVSISLGLWSTLIMYLASIPLGIAKATRHGSKFDVWTSSAIIVGYAIPAFL 175
           V DLI+E++PVSISLGLWSTL++YL SIPLGI+KA  HGS+FDVW+S+ +I+GYAIP FL
Sbjct: 121 VIDLIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFL 180

Query: 176 FAILLIVLFAGGSYWNWFPLRGLTSANFDDLSLGGKIIDYFWHLALPVTALVIGNFATLT 235
           FAI+LI+LFA G+Y++WFPLRGL S NF  L    +++DYFWHL LP  A+VIG FATL+
Sbjct: 181 FAIILIILFASGNYFSWFPLRGLVSDNFASLPWYQQVLDYFWHLTLPTLAMVIGGFATLS 240

Query: 236 LLTKNSFLDEINKQYVITARAKGLSKNRVLYGHVFRNAMLIIIAGFPAAFIGMFFTGSLL 295
           +LTKNSFLDEINKQYV+TARAKGL + R+LY HVFRNAMLIIIAGFP+AFI +FFTGS+L
Sbjct: 241 MLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIFFTGSML 300

Query: 296 IEVIFSLDGLGLLSFEAAINRDYPVVFGTLFLFTLLGLVVKLIGDLTYTLVDPRIDFESR 355
           IEV+FSL+G+GLL FEA I RDYP+VF +L++ TLLGL++ +I DLTY  VDPRIDFE+R
Sbjct: 301 IEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRIDFEAR 360