Pairwise Alignments

Query, 357 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  169 bits (429), Expect = 7e-47
 Identities = 105/353 (29%), Positives = 177/353 (50%), Gaps = 48/353 (13%)

Query: 1   MLAYIFRRLLLIIPTLFGILLINFIIIQAAPGGPVEQAIAKLEGFEGATSRIAGGGSEVA 60
           ML +I +R+   IPT+  ++ I+F +++ APG P                          
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP-------------------------- 34

Query: 61  VAGTSYRGAQGLDPELVAEIERLYGFDKPPVERFWIMLSNYLRLDFGESF-FRDAKVTDL 119
                +   + L PE++A I   YG DKP  E++   L+N ++ DFG SF ++D  V +L
Sbjct: 35  -----FSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNEL 89

Query: 120 IIEKMPVSISLGLWSTLIMYLASIPLGIAKATRHGSKFDVWTSSAIIVGYAIPAFLFAIL 179
           I   +PVS+ +GL + +   +  + +G   A +  +  D    S  ++G  +P+F+ A +
Sbjct: 90  IASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPV 149

Query: 180 LIVLFAGGSYWNWFPLRGLTSANFDDLSLGGKIIDYFWHLALPVTALVIGNFATLTLLTK 239
           LI +FA    ++ FP  G     F+             ++ALPV  + +   AT   +T+
Sbjct: 150 LIYIFA--IQFSLFPAGGWQDGGFE-------------YMALPVLGMSLLYVATFARITR 194

Query: 240 NSFLDEINKQYVITARAKGLSKNRVLYGHVFRNAMLIIIAGFPAAFIGMFFTGSLLIEVI 299
            S ++ +N  ++ TARAKGLS   ++  H  + A+L +++    AF+G+  TGS++IE I
Sbjct: 195 GSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGII-TGSVVIETI 253

Query: 300 FSLDGLGLLSFEAAINRDYPVVFGTLFLFTLLGLVVKLIGDLTYTLVDPRIDF 352
           F L G+G L   AA NRDY +V G   L   L ++   I D+    +DP+I +
Sbjct: 254 FGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306