Pairwise Alignments

Query, 357 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 339 a.a., oligopeptide ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  191 bits (486), Expect = 2e-53
 Identities = 115/347 (33%), Positives = 183/347 (52%), Gaps = 31/347 (8%)

Query: 5   IFRRLLLIIPTLFGILLINFIIIQAAPGGPVEQAIAKLEGFEGATSRIAGGGSEVAVAGT 64
           + R+L  ++    GI +I F +I  APG P +         E   + +AG          
Sbjct: 16  MLRKLAWMVVVFLGITVICFWVIHLAPGSPTD--------LETTMNPLAGA--------- 58

Query: 65  SYRGAQGLDPELVAEIERLYGFDKPPVERFWIMLSNYLRLDFGESFFRDAK-VTDLIIEK 123
                     E    +E +YG D+P   ++   L   +RLDFG S   D + V + I E+
Sbjct: 59  ----------EARKRLESIYGLDQPLYVQYAQWLGRLVRLDFGNSMSSDGRPVMERIRER 108

Query: 124 MPVSISLGLWSTLIMYLASIPLGIAKATRHGSKFDVWTSSAIIVGYAIPAFLFAILLIVL 183
           +P+++ + + +  +  L ++P+G+A A   G  FD   +  + +G+A+P F  A+LL++ 
Sbjct: 109 LPLTVGMNVAALFLTLLLAVPIGVASAHWQGGWFDRGMTVLVFIGFAMPGFWLALLLMLF 168

Query: 184 FAGGSYWNWFPLRGLTSANFDDLSLGGKIIDYFWHLALPVTALVIGNFATLTLLTKNSFL 243
           F  G +  W PL GLTS ++  LS  GK +D   HLALP+     G+ A ++   +++ L
Sbjct: 169 F--GIHLGWLPLSGLTSLDYATLSPWGKFLDVARHLALPLFIYTFGSLAGMSRFMRSAML 226

Query: 244 DEINKQYVITARAKGLSKNRVLYGHVFRNAMLIIIAGFPAAFIGMFFTGSLLIEVIFSLD 303
           + + + Y++TARAKGL    V++ H  RNA+L +I     +  G+   GS++IE IF+L 
Sbjct: 227 EVLRQDYILTARAKGLPTRTVIFRHALRNALLPVITILGLSLPGL-IGGSVIIESIFALP 285

Query: 304 GLGLLSFEAAINRDYPVVFGTLFLFTLLGLVVKLIGDLTYTLVDPRI 350
           GLG L + A + RDYP++ G L L  +L     LI DL Y L DPRI
Sbjct: 286 GLGQLFYTAVMARDYPLIMGNLVLGAVLTQAGNLIADLCYGLADPRI 332