Pairwise Alignments

Query, 339 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 352 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  490 bits (1261), Expect = e-143
 Identities = 228/334 (68%), Positives = 288/334 (86%), Gaps = 1/334 (0%)

Query: 4   SPLNQRRLALFKAHKRGWWSLWIFLVLFVLSLGAEIIANDKPIVVRYDGEWFVPVFKRYP 63
           +PL + R A FKA++RG+WSLWIFL+LFV+SL AE+IANDKP++++YDG W++P+ +RY 
Sbjct: 13  NPLTEARWARFKANRRGFWSLWIFLLLFVVSLFAELIANDKPLLIQYDGAWYMPIVQRYS 72

Query: 64  ETAFGGEFPLQANYKSPYIQELIAEKGGWMVWPVIPFNYSSINYELQVPAPAPPSLENWL 123
           ET FGGEF  +A+Y  PY+  LI EKG  ++WP+I F+Y +IN+++    P+ P   NWL
Sbjct: 73  ETQFGGEFDTEADYTDPYVVSLIEEKGQ-IIWPLIRFHYDTINFDITGSVPSAPDSVNWL 131

Query: 124 GTDDQGRDVLARVIYGFRISVLFALTLTLISSVIGVIAGALQGFYGGWVDLVGQRLLEIW 183
           GTDD+GRDVLAR+IYGFRISVLF   LT+ISS+IGV+ GA QG+YGGW+DL GQR +E+W
Sbjct: 132 GTDDKGRDVLARIIYGFRISVLFGFILTVISSLIGVLIGATQGYYGGWLDLFGQRFIEVW 191

Query: 184 SGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEYVRAARALGM 243
           SG+P L+LLIIL+SFV+PNFWWLLGIM+LFSWMSLV VVRAEFLR RN +YVRAA+A+G+
Sbjct: 192 SGMPTLFLLIILSSFVEPNFWWLLGIMVLFSWMSLVGVVRAEFLRCRNFDYVRAAQAMGV 251

Query: 244 QNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSLGELVAQGKAN 303
            +  I+ RH+LPNAMV+++T MPFIL+G++ TLT+LDFLGFGLPAGSPSLGEL+AQGKAN
Sbjct: 252 SDMRIILRHMLPNAMVASLTMMPFILSGSVTTLTSLDFLGFGLPAGSPSLGELLAQGKAN 311

Query: 304 LQAPWLGISAFMVLAIMLTLLVFIGEAARDAFDP 337
           LQAPWLGISAF+VL++MLTLLVFIGEA RDAFDP
Sbjct: 312 LQAPWLGISAFVVLSVMLTLLVFIGEAVRDAFDP 345