Pairwise Alignments

Query, 339 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  134 bits (336), Expect = 4e-36
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 115 APPSLENWLGTDDQGRDVLARVIYGFRISVLFALTLTLISSVIGVIAGALQGFYGGWVDL 174
           A PS E+W GTD  GRD+  R + G RIS++  +   L++ +IG + GA  GF GG  D 
Sbjct: 74  AGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDR 133

Query: 175 VGQRLLEIWSGLPVLYLLIILASFVQPNFWWLLGIMLLFSWMSLVDVVRAEFLRGRNLEY 234
           V  R+LEI   +P ++L+I+L +F   N   +   +   +W+ +  +VR + L  R+ E+
Sbjct: 134 VMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEF 193

Query: 235 VRAARALGMQNGAIMFRHILPNAMVSTMTFMPFILTGAIGTLTALDFLGFGLPAGSPSLG 294
           + AA   G+    I+ RHI+PN +     +   ++   I T + L FLG G+     S G
Sbjct: 194 IEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWG 253

Query: 295 ELVAQGKANLQ-APW--LGISAFMVLAIMLTLLVFIGEAARDAFDPR 338
            L+ +G   ++ A W  L  +AFMVL   L    ++G+  RDA DP+
Sbjct: 254 ALLQEGANTMEVAIWQLLFPAAFMVLT--LFCFNYVGDGLRDALDPK 298