Pairwise Alignments

Query, 438 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 426 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

 Score =  284 bits (726), Expect = 4e-81
 Identities = 169/409 (41%), Positives = 243/409 (59%), Gaps = 3/409 (0%)

Query: 23  IKDSLYREMMVLELDRQGRIQYANELFLNEMGYRRDDIVGRALDDFFTAQFRAEPNYARL 82
           I  SL   +  +E D  G +  AN LFLN +GYR +++ G+    F +        Y + 
Sbjct: 19  IVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQQF 78

Query: 83  KTAMQRAEHISGAYRLLRADGQEAWLRSIWQPIKSSNGTLLHFTLCATNLTRTIEASREH 142
            T++ + +  SG +   + DG    L + + PIK+ +G +      A+++T     +   
Sbjct: 79  WTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPIKT-DGKVSSVMKIASDVTEQYLHAESQ 137

Query: 143 ESVINALLRSTAVIEFDLGGHVITANQRFLDGMGYRLEQIKGKHHRMFCEREEAESAAYR 202
             ++ AL ++ AVIEF+  G +I+AN  FL  MGY L+QIKGKHHR+FC  E  +   + 
Sbjct: 138 RDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQ--HP 195

Query: 203 EFWASLNRGEYIAERFKRIDAHGQAVWLEASYNPVHDAYGKLYKVIKFATVITDQVNREL 262
            FW SL  G+  + RF R +++G  VW++ASY+PV D   K+YK++KFA+ IT +V RE 
Sbjct: 196 TFWKSLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVLREQ 255

Query: 263 AVAEAATIAFDTSQHTDLSAQRGAQVVQQTVDVMHRIAQQMQDASDGIEALDKQSQLISA 322
            V +AA IA+ TS  T   AQ G  V+Q +V +  ++   ++ +   IE L   S+ +S 
Sbjct: 256 QVTDAANIAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSKDVSE 315

Query: 323 ILKTISGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAARTSTAAKEIVGVVQK 382
           I+KTISGIADQTNLLALNAAIEAARAG+QGRGFAVVADEVRQLA+RTS A +EI  VV K
Sbjct: 316 IVKTISGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSKATEEINQVVNK 375

Query: 383 NQDLAQAAVHSMSVSREQTEQGLEFANQAGAVIVEIQDGAQRVVSAVGQ 431
           N  L +A   S+S   +   +      +   ++ +I  GA+ V SAV Q
Sbjct: 376 NLSLTEAVTSSISQVSQIANETNGRIVEVSTIMEQIYQGAENVSSAVSQ 424



 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 143 ESVINALLRSTAVIEFDLGGHVITANQRFLDGMGYRLEQIKGKHHRMFCEREEAESAAYR 202
           ++++ +L    A IEFD  G+VI+AN  FL+ +GYRLE++ GKHHR+FC   E +S  Y+
Sbjct: 17  DNIVQSLSEHIASIEFDTSGNVISANPLFLNAVGYRLEELTGKHHRIFCSPAECQSQQYQ 76

Query: 203 EFWASLNRGEYIAERFKRIDAHGQAVWLEASYNPVHDAYGKLYKVIKFATVITDQ 257
           +FW SL +G+  +  F R    G  + LEA+Y P+    GK+  V+K A+ +T+Q
Sbjct: 77  QFWTSLAQGKSHSGTFMRYKKDGSLLVLEATYFPI-KTDGKVSSVMKIASDVTEQ 130



 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 63/300 (21%), Positives = 130/300 (43%), Gaps = 15/300 (5%)

Query: 19  TDRQIKDSLYREMMVLELDRQGRIQYANELFLNEMGYRRDDIVGRALDDF-FTAQFRAEP 77
           + R +  +L +   V+E +  G I  AN  FL  MGY  D I G+    F F   ++  P
Sbjct: 136 SQRDLLTALNQNFAVIEFEPDGTIISANSAFLKTMGYSLDQIKGKHHRLFCFDEFYQQHP 195

Query: 78  NYARLKTAMQRAEHISGAYRLLRADGQEAWLRSIWQPIKSSNGTLLHFTLCATNLTRTIE 137
            + +   ++   +  SG +    + G + W+++ + P+K  N  +      A+++T  + 
Sbjct: 196 TFWK---SLAAGQAYSGRFLRKNSYGSQVWIQASYSPVKDQNNKVYKIVKFASDITAEVL 252

Query: 138 ASREHESVINALLRSTAVIEFDL---GGHVITANQRFLDGMGYRLEQIKGKHHRMFCERE 194
             ++     N +  ST+V    +   G HV+  + R  + M   +EQ   +  ++    +
Sbjct: 253 REQQVTDAAN-IAYSTSVETSQVAQGGNHVLQDSVRLAEKMVGNIEQSLQQIEQLVVLSK 311

Query: 195 EAESAAYREFWASLNRGEYIAERFKRIDAHGQAVWLEASYNPVHDAYGKL-YKVIKFATV 253
           +  S   +      ++   +A     I+A  +A      +  V D   +L  +  K    
Sbjct: 312 DV-SEIVKTISGIADQTNLLALN-AAIEA-ARAGEQGRGFAVVADEVRQLASRTSKATEE 368

Query: 254 ITDQVNRELAVAEAATIAFDTSQHTDLSAQRGAQVVQQTVDVMHRIAQQMQDASDGIEAL 313
           I   VN+ L++ EA T +   SQ + ++ +   ++V+ +  +M +I Q  ++ S  +  L
Sbjct: 369 INQVVNKNLSLTEAVTSSI--SQVSQIANETNGRIVEVST-IMEQIYQGAENVSSAVSQL 425