Pairwise Alignments

Query, 724 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (510), Expect = 1e-55
 Identities = 123/358 (34%), Positives = 203/358 (56%), Gaps = 7/358 (1%)

Query: 370 LAVIALWISSRALALPIRKAAQLAGAIQKGDFSQRM-AHQSADEVGQLSASLDRMADS-- 426
           L  +  W+         ++ A++  A   GDFSQR+ +H        L+ SL+ + ++  
Sbjct: 249 LGSVVEWLDRTEEVQVEQEIARIVAAAAAGDFSQRVDSHGKQGFFLMLANSLNSLIETSD 308

Query: 427 --LQEQVHVAERISQGDLAVEVRLASEQ--DQLGLALRRMVDNLNGLVSQVQQSSELIND 482
             LQ+   V   +++GDL   +    E   + L     +  + L+ ++  +Q++++ IN 
Sbjct: 309 RGLQDVARVLMAMAEGDLTTRIYNEYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINT 368

Query: 483 KAGRVTTLSQDLSNGATESASAVTEISATVNQMAGQIRQTSEYASEANALSRNSEHSARS 542
            +  +   + DLS+   E AS++ E SA++ ++ G ++  ++ AS+ANAL+  +   A  
Sbjct: 369 ASSEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNADNASQANALASKAADVAED 428

Query: 543 GNELMVSLKAAMQEINQSGLDITNIIRAIEEIATQTNLLALNAAIEAARAGEHGRGFAVV 602
           G EL+  +   M  IN+S   I +II  I+ IA QTN+LALNAA+EAARAGE GRGFAVV
Sbjct: 429 GGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 488

Query: 603 ADEVRQLAARSAEAAQRSTRLIQESNARTIKGMEITDDTARALEAIVQGAAQVSQLVDEI 662
           A EVR LA RSA AA+    LI +S ++   G  +   +   ++ IV    +V+ ++ EI
Sbjct: 489 ASEVRSLAQRSANAAKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEI 548

Query: 663 ASASSQQASGIEQVSQAIGQIDEVVHHNSTNSEQSTQAAQELTQQAQQMIVQVGRFKV 720
           ASAS++QA GI+++ +A+ Q+DE+   N+   E++  AA+ +  QAQQ+   V  FKV
Sbjct: 549 ASASNEQAIGIDEIGKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFKV 606