Pairwise Alignments

Query, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  271 bits (692), Expect = 6e-77
 Identities = 168/491 (34%), Positives = 263/491 (53%), Gaps = 5/491 (1%)

Query: 6   PVSGREVVVGDTANILSTTDLKGTITYANPDFVAISGFSEDELLGQPHNIVRHPDMPEAA 65
           P + +EV+VGD   ++STTDLKG ITY N  F  I+GF  DELLG+ HNIVRH  MP+AA
Sbjct: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81

Query: 66  FADLWQTLQANRSWMGMVKNRCKNGDHYWVSAFATPVSRNGKVKEYQSVRTRPQPEQIR- 124
           FAD+W  L+   +W G+VKNR K+G  YWV A+ TP+ + G++  YQSVR + + + +  
Sbjct: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVKAERKWVEI 141

Query: 125 AAEALYAQLRDGRGAPTLRSSVGLRERLALLAAAGAAGGVVVGTVLAASPIAATLAGLAL 184
           A +A  A L   +    ++  +    R ALL  A  +  +  G    A      LA L  
Sbjct: 142 ATKAYQALLAAEKAGKKIQFKLHTSLRYALLLGALMSPALAHG--FQAPEQWQWLASLLP 199

Query: 185 GGAAAVAAATALLPLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLETEAGAMV 244
            G   +     L+   +  +Q +   D+ +S+LIY+G  D     ++ +KM       ++
Sbjct: 200 AGVLGLLFRQELVRTPQQLKQWQNEYDS-ISRLIYSG-ADAFSVADYHLKMASARIRTIL 257

Query: 245 GRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALNAQRTA 304
           GR+ DS+R L + A  L        Q+ A Q      +  A   + ++ + V+ +     
Sbjct: 258 GRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESAAERVSSHTHSAH 317

Query: 305 EVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVIHGIAE 364
           ++  +     A+ +  +  T  ++ RLA   + AA    +L + +Q++ +++  I GIAE
Sbjct: 318 QLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQVGQLMTEIGGIAE 377

Query: 365 QTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTGAREAVD 424
           QTNLLALNAAIEAARAGEQGRGFAVVADEVR L++RT  AT  IQ  I ++ +       
Sbjct: 378 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSIDTMLSTIEAWRG 437

Query: 425 VMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEISQSIVS 484
            +  SR+Q E     A+     L  +   ++++  +  ++A+A   Q  +  E++Q I S
Sbjct: 438 DITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHS 497

Query: 485 IRGSSDEHVAS 495
           I   + ++ A+
Sbjct: 498 IASVATQNSAA 508



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 33/187 (17%)

Query: 189 AVAAATALLPLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLETEAGAMVGRIA 248
           A  A +A L   +L+ QA+QVG     QL+      EIG I     +L   A     R  
Sbjct: 345 ATQAESAALTTLKLSDQAQQVG-----QLM-----TEIGGIAEQTNLLALNAAIEAARAG 394

Query: 249 DSSRQLSDHARDLLGAMHGSTQSAARQ-QQETDLIATAIQQMSASV-------QEVALNA 300
           +  R  +  A D + A+   TQ A +Q Q   D + + I+     +       ++ A +A
Sbjct: 395 EQGRGFAVVA-DEVRALSARTQRATQQIQTSIDTMLSTIEAWRGDITASRDQTEQCAQDA 453

Query: 301 QRTAE--------------VAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLE 346
             T +              V     S A   RE+       I  +A+   Q +   H +E
Sbjct: 454 NTTLQQLQDVECVMSDMLRVIGEVASAAQHQRELTCEVNQHIHSIASVATQNSAATHTVE 513

Query: 347 NHSQEIS 353
             +  +S
Sbjct: 514 QLAMAMS 520