Pairwise Alignments

Query, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  518 bits (1333), Expect = e-151
 Identities = 274/527 (51%), Positives = 367/527 (69%), Gaps = 4/527 (0%)

Query: 1   MRLNLPVSGREVVVGDTANILSTTDLKGTITYANPDFVAISGFSEDELLGQPHNIVRHPD 60
           MR NLPV+G  + +  + NILSTT     ITY NPDF+ ISGF+E+EL+GQPHN+VRHPD
Sbjct: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64

Query: 61  MPEAAFADLWQTLQANRSWMGMVKNRCKNGDHYWVSAFATPVSRNGKVKEYQSVRTRPQP 120
           MP AAFA +W TL++ RSWMG+VKNRCKNGDHYWVSAFA P+ +NGKV EYQSVRT+P+P
Sbjct: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124

Query: 121 EQIRAAEALYAQLRDGRGA-PTLRSSVGLRERLALLAAAGAAGGVVVGTVLAASPIAATL 179
             ++AAE  YAQLR+G+   P +R  +G   +L LL        + + +++  S + + L
Sbjct: 125 SHVQAAEKAYAQLRNGKNILPKIR--LGFHWKLILLVWGSLFASIAIVSLIYPSALMSIL 182

Query: 180 AGLALGGAAAVAAATALL-PLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLET 238
               L G+      T LL P+ RL +   +  DNP+SQ++YTGR DE GQ+EFA++M + 
Sbjct: 183 FLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVLYTGRSDEFGQLEFALRMAQA 242

Query: 239 EAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVAL 298
           E  A++GRI D+S QL+  A DLL  +  S    + QQ ET+ +ATAI +M+AS+QEVA 
Sbjct: 243 ETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVATAINEMAASIQEVAT 302

Query: 299 NAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDV 358
            A+  A  +  A+ E   G+++V +   SIT L  ++ QA +VIH+LE HS +IS+VL+V
Sbjct: 303 GAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIHELEEHSNDISKVLEV 362

Query: 359 IHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTG 418
           I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA+RT  +T DIQRMI +LQ  
Sbjct: 363 IRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQSTMDIQRMIDTLQGR 422

Query: 419 AREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEI 478
           A+ AV VM+ S +QA  SV  A QA  +L+GI  RV++I+ MS Q+A AVDQQS+V +EI
Sbjct: 423 AKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQMATAVDQQSAVSDEI 482

Query: 479 SQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQFWTRRR 525
           + SI +IR ++D +V +G  + + A GVA L+  + EL QQFW R +
Sbjct: 483 NHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQQFWERNK 529