Pairwise Alignments

Query, 441 a.a., ATPase related to the helicase subunit of the Holliday junction resolvase from Pseudomonas stutzeri RCH2

Subject, 442 a.a., recombination factor protein RarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  521 bits (1341), Expect = e-152
 Identities = 262/436 (60%), Positives = 326/436 (74%), Gaps = 1/436 (0%)

Query: 4   FSREPVSQPLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTL 63
           F   P   PLAAR+R AS++EY+GQ HLL  GKPLR+AL  G +HSM+ WGPPG GKTTL
Sbjct: 5   FDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTGKTTL 64

Query: 64  ARLLAKVSDAHFETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDA 123
           A L+A+ ++AH E +SAV +GVKEIR A+E AK  A   G+RT+LFVDEVHRFNKSQQDA
Sbjct: 65  AELVARYANAHVERISAVTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDA 124

Query: 124 FLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALS-EPKGL 182
           FLP++EDGT+IFIGATTENPSFE+NNALLSR RVY++K L++ A+ +++A+A S E +GL
Sbjct: 125 FLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYLIKRLEDDAIGQILAQANSDEARGL 184

Query: 183 GDLQLELPEESFQMLLAAADGDGRRLLNLLENASDLAEQGGTISTDLLQDLLGDSRRRFD 242
           G   L L  E    +    DGD R+ LNLLE  SDL   GG  + +LL ++ G     +D
Sbjct: 185 GKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQAAGYD 244

Query: 243 KGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPLYLARRVVRMASEEIGNADPR 302
           K G+ +YD ISA+HKS+RGS PDAALYWF R+L+GG DPLY+ARR++ +ASE+IGNADP 
Sbjct: 245 KNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGNADPN 304

Query: 303 ALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYTAFKAAMRDAAENGSQEVP 362
           A+ + LNAWD   R+G  EGE A+AQA++YLA APKSNAVYTAFKAA   A E G+  VP
Sbjct: 305 AMTVALNAWDCFHRVGPAEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGNAPVP 364

Query: 363 LHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFPEAMEPRRYYHPAPRGLESKIRD 422
            HLRNAPTKLM ELG G  YRYAHDE  A+AAGE+YFPE ++  R Y P  RG E +IRD
Sbjct: 365 NHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENYFPEVLQHSRIYQPTARGFEKRIRD 424

Query: 423 KLEHLARLDRESPIQR 438
           KL HL  L+++S  +R
Sbjct: 425 KLAHLDALNQQSGRKR 440