Pairwise Alignments

Query, 441 a.a., ATPase related to the helicase subunit of the Holliday junction resolvase from Pseudomonas stutzeri RCH2

Subject, 445 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  527 bits (1358), Expect = e-154
 Identities = 259/436 (59%), Positives = 331/436 (75%), Gaps = 1/436 (0%)

Query: 4   FSREPVSQPLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTL 63
           F+  P  +PLAAR+R  ++ EY+GQ HLL  G+PLR+ALE G  HSM+ WGPPG GKTTL
Sbjct: 8   FNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTL 67

Query: 64  ARLLAKVSDAHFETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDA 123
           A L+A  S+AH E +SAV +GVK+IR A+E A+  A   G+RT+LFVDEVHRFNKSQQDA
Sbjct: 68  AELIAHYSNAHVERISAVTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNKSQQDA 127

Query: 124 FLPYVEDGTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALSEP-KGL 182
           FLP++EDGT+IFIGATTENPSFE+NNALLSRARVY++K L +  +  ++ +AL++  +GL
Sbjct: 128 FLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALADTERGL 187

Query: 183 GDLQLELPEESFQMLLAAADGDGRRLLNLLENASDLAEQGGTISTDLLQDLLGDSRRRFD 242
           G   L +P +    L    DGD R+ LNLLE  SD+   GGT +T++L  + G     FD
Sbjct: 188 GQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGTFTTEMLVQVAGHQVAGFD 247

Query: 243 KGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPLYLARRVVRMASEEIGNADPR 302
           K G+ FYD ISA+HKS+RGS PDAALYWF R+L+GG DPLY+ARR++ +ASE++GNADP 
Sbjct: 248 KNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPA 307

Query: 303 ALPLCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYTAFKAAMRDAAENGSQEVP 362
           A+ + LNAW+   R+G  EGE A+AQAIVYLA APKSNAVYTAFKAA   A E G + VP
Sbjct: 308 AMTIALNAWECFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQEAVP 367

Query: 363 LHLRNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFPEAMEPRRYYHPAPRGLESKIRD 422
            HLRNAPTKLM E+G+G EYRYAHDEP+AYA+GE+YFPE+++  ++Y P  RG E +I+D
Sbjct: 368 YHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLKESQFYFPTERGFEKRIKD 427

Query: 423 KLEHLARLDRESPIQR 438
           KL  LA+LD+ S  +R
Sbjct: 428 KLVQLAQLDQASGRKR 443