Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 640 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  238 bits (606), Expect = 7e-67
 Identities = 136/323 (42%), Positives = 196/323 (60%)

Query: 200 PLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQH 259
           PLQ       ++    + Q     R DE G +   ++ + T    ++G I D   Q++  
Sbjct: 316 PLQDTLAVVDRIAAGDLTQGTVVTRGDELGVLQQGIQRMGTTLRDLIGGIRDGVTQIASA 375

Query: 260 AHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATG 319
           A EL    + ++   + Q++ETDQVATA+ +M+A+V EVA NA++    AS AD++   G
Sbjct: 376 AEELSAVTEQTSAGVNSQKTETDQVATAMQEMSATVHEVARNAEQACTVASEADAQARIG 435

Query: 320 TEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEA 379
            +VV +    I +LA ++ ++ D + ELE  S  I K++DVIR +AEQTNLLALNAAIEA
Sbjct: 436 DQVVAQAIVQIERLASEVGRSVDAMDELEQESARIGKIMDVIRAVAEQTNLLALNAAIEA 495

Query: 380 ARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSV 439
           ARAG+ GRGFAVVADEVR LA RTQ ST+EI  ++  LQ G RQ   +M+ SRE    SV
Sbjct: 496 ARAGDAGRGFAVVADEVRGLAQRTQHSTEEIESLVAGLQNGTRQVSSIMRNSRELTDSSV 555

Query: 440 EHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGL 499
           E A +A  SL  I   V+ I  M+QQIAAA  QQS+V+E I+++I+++R  S+   +   
Sbjct: 556 ELAGKAGISLGNITQAVSGIQAMNQQIAAAAVQQSSVAEEISRSILNVRDVSEQTASASE 615

Query: 500 RSRQSASGVAELANSMEVLVQQF 522
            +  S+  +A L N ++ LV  F
Sbjct: 616 ETAASSIELARLGNQLQQLVSHF 638