Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 518 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  389 bits (998), Expect = e-112
 Identities = 212/522 (40%), Positives = 319/522 (61%), Gaps = 7/522 (1%)

Query: 1   MRMNLPVTGRDVSFSETANILSTTDLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPD 60
           MR N PVT ++V++    N+LSTT L+  I Y + +F  ++G+   EL+ Q HN+VRHPD
Sbjct: 1   MRNNQPVTQKEVTYPPHFNLLSTTTLSSHIKYASKEFCDVAGYTLDELVNQPHNMVRHPD 60

Query: 61  MPTEAFADLWGSVRGGRSWMGMVKNRCKNGDHYWVSAFVTPISRNGRVMEYQSVRTKPQP 120
           MP EAF D+W  ++ G+SWMGMVKNRCKNGDHYWV AF +PI  NG+V+EYQSVR  P  
Sbjct: 61  MPPEAFKDMWEHLKAGKSWMGMVKNRCKNGDHYWVDAFASPIKENGKVVEYQSVRLCPSR 120

Query: 121 AQIAAAERLYAQLRDKRTPVALRRKPLSARSRVALFAALGAAPCVVAGGLLGGAGVAIAL 180
             +  A++LY +++  +TP  L+        R+ L   + A     A     GAG+ + L
Sbjct: 121 QHVDNADKLYKEIKAGKTPWQLKMPRTRLWQRLGLGFIVAAGVSFAADRFFAGAGLPLML 180

Query: 181 ATAAAAALGAGGLAYLALAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLET 240
                       +AY     L+ L+++AR+V DNP+ +L+Y GR D+  +I  AMKM ++
Sbjct: 181 VLTIL-------MAYQFTRRLETLSQEARKVFDNPLMELVYNGRVDDLSEIQLAMKMRQS 233

Query: 241 EAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVAN 300
           E  A+VGRI D+S Q+ + A        ++  +   Q  ET+Q+ATAI QM  +  E+A+
Sbjct: 234 ELNAVVGRIQDSSIQIGEAAKMSSQNSATTADNLDAQTRETEQLATAITQMNITATEIAH 293

Query: 301 NAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDV 360
           NAQ  ++A   A +    G   V +T  AIG++A  ++ A  VI +L + S  I +V++V
Sbjct: 294 NAQAASDATVHAKNAARDGMHAVEQTVDAIGEMASQMKTASSVIEQLSSQSAMIGQVMEV 353

Query: 361 IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGG 420
           I+ IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA R+ +ST+EI  +I ++Q  
Sbjct: 354 IQSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRKLAQRSTESTKEIQEVITSIQTS 413

Query: 421 ARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENI 480
            R AVE +++  + ++  V++A  +   L  + S+V++I+  ++QIA A+E+ + V+E++
Sbjct: 414 TRNAVETIEQGNKLSVSCVDNAHLSGDKLTALLSQVSDITMRNEQIATAIEEMANVTEDM 473

Query: 481 NQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522
           N+++ SI   S   +     ++     +A        LV QF
Sbjct: 474 NRSVQSISDVSTETLGLAENTQNECRQLAHNLAQQTSLVAQF 515