Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  254 bits (650), Expect = 4e-72
 Identities = 171/528 (32%), Positives = 272/528 (51%), Gaps = 27/528 (5%)

Query: 6   PVTGRDVSFSETANILSTTDLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPDMPTEA 65
           P   ++V   +   ++STTDL G ITY N  F +I+GF+  EL+G++HNIVRH  MP  A
Sbjct: 22  PSAQQEVLVGDHDQLVSTTDLKGVITYCNDTFCRIAGFQADELLGKNHNIVRHASMPKAA 81

Query: 66  FADLWGSVRGGRSWMGMVKNRCKNGDHYWVSAFVTPISRNGRVMEYQSVRTKPQPAQIAA 125
           FAD+W  ++ G +W G+VKNR K+G  YWV A+VTPI + G++  YQSVR K        
Sbjct: 82  FADMWHHLKQGHAWRGIVKNRTKSGGFYWVDAYVTPIYQQGQLTGYQSVRVK-------- 133

Query: 126 AERLYAQLRDKRTPVALRRKPLSARSRVALFAALGAAPCVVAGGLLGGAGVAIALATA-- 183
           AER + ++  K     L  +    + +  L  +L  A       LL GA ++ ALA    
Sbjct: 134 AERKWVEIATKAYQALLAAEKAGKKIQFKLHTSLRYA-------LLLGALMSPALAHGFQ 186

Query: 184 -------AAAALGAGGLAYLALAPLQQLAEQARQVGD--NPVGQLIYAGRRDEYGQIAFA 234
                   A+ L AG L  L    L +  +Q +Q  +  + + +LIY+G  D +    + 
Sbjct: 187 APEQWQWLASLLPAGVLGLLFRQELVRTPQQLKQWQNEYDSISRLIYSG-ADAFSVADYH 245

Query: 235 MKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAAS 294
           +KM       ++GR+ D++R L + A++L        Q+ + Q S    V  A + + ++
Sbjct: 246 LKMASARIRTILGRMMDSARPLGELANQLHLTTQEVHQALAAQNSNIQAVTQATDAVESA 305

Query: 295 VQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDI 354
            + V+++     +   +     A     +N T   + +LA   + A     +L   +  +
Sbjct: 306 AERVSSHTHSAHQLIDQVQDHCAETKHSINVTHQNLQRLATQAESAALTTLKLSDQAQQV 365

Query: 355 TKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMI 414
            +++  I GIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L++RTQ++TQ+I   I
Sbjct: 366 GQLMTEIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALSARTQRATQQIQTSI 425

Query: 415 GALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQS 474
             +          +  SR+Q  Q  + A    + L  +   ++++  +  ++A+A + Q 
Sbjct: 426 DTMLSTIEAWRGDITASRDQTEQCAQDANTTLQQLQDVECVMSDMLRVIGEVASAAQHQR 485

Query: 475 AVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522
            ++  +NQ+I SI   +  + A      Q A  ++        L +QF
Sbjct: 486 ELTCEVNQHIHSIASVATQNSAATHTVEQLAMAMSGKVAEFGALSKQF 533