Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 70.1 bits (170), Expect = 3e-16
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 3/176 (1%)

Query: 204 FVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTGTF 263
           FVL GA++   G     +  A  ++G  RGG +   +VAS   G ISGSS+A+  + G+ 
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFASVLVGFVRGGLSLVNLVASSFFGAISGSSVADTASVGSV 120

Query: 264 TIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFLPAL 323
            IP M R G+  + A AV V+ SV   + PP   A  + +     +    +     +P +
Sbjct: 121 LIPEMTRRGYPRDYATAVTVSGSVQALLTPPSHNAVLYSLAAGGTVSIGSLFMAGIVPGI 180

Query: 324 ISYIALIYIVHLESMKLGL---QALPRANVAKPWMQRLIGFVFGAALISGLSLGVY 376
           +  + L+ +  + + K      + +P     K   + + G +    ++ G+  GV+
Sbjct: 181 MMNLCLMALCLVFAKKRNYPKGEVIPLKQALKICREAMWGMMTLFIILGGILSGVF 236



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 12/113 (10%)

Query: 524 IIVGAVSQTGVGLVLADLVELLSMGNLLL------MLLLTAFLSLILGMGLPTTANYIVV 577
           I++G  +  G  + L ++   ++   L L      +L+    + L+LG  +      +++
Sbjct: 281 ILIGFAASFGYIMTLMEIPAKITTAFLTLSDNRYVILMCINVMLLLLGTVMDMAPLILIL 340

Query: 578 SSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSK 630
           + +L PVIV +G        ++ V+L +   G+   +TPPVG   F  +A+ K
Sbjct: 341 TPILMPVIVGIGVDPVQFGMIMLVNLGI---GL---ITPPVGAVLFVGSAIGK 387