Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

 Score =  379 bits (973), Expect = e-109
 Identities = 251/677 (37%), Positives = 363/677 (53%), Gaps = 70/677 (10%)

Query: 32  LALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLAFALLLAFLAYPAFKRSPRDRVPLV 91
           +ALL+S+FQ+  A+       F  ++    R++H+ F L + FL+YPA  R  R   PL 
Sbjct: 22  VALLFSIFQIVTAA-------FSPVSSIVLRAVHVGFLLWVVFLSYPAHGRQ-RPWQPLA 73

Query: 92  DIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVTACIGIPLLLEATRRALGPPLAIIA 151
            + L L   A+A Y ++  S L QR G+LTT D++   + + L+ EA RR +G  L II 
Sbjct: 74  WV-LSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALPIIC 132

Query: 152 LVFLVYSVAGPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSFVFLFVLFGALL 211
            +FL Y + G ++PG LAHRG     + N     TEG++G    VS +++FLF+LFGA L
Sbjct: 133 GLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFL 192

Query: 212 ERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTGTFTIPMMKRT 271
           E+AG    F   A  + GH  GGPAK AVV+S + G I+GS IANVVTTG FTIP+MKR 
Sbjct: 193 EKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLMKRF 252

Query: 272 GFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFLPALISYIALIY 331
           G+ A  AG VE  SS+  QIMPPVMGA AF+M E + +P+VE+ K A +PA + + ++ +
Sbjct: 253 GYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGSVFW 312

Query: 332 IVHLESMKLGLQALPRANVAKPWMQRLIGFVFGA-ALISGLSLGVYYGLGWLKPLLGDSA 390
           +VHLE+ +  L+ LP+      W     G V  +  L+  L + VY       PL     
Sbjct: 313 MVHLEAKRSDLKGLPKDQCPSAW-----GAVKDSWFLLIPLGVLVYLLFSGRTPLFSG-- 365

Query: 391 LWVIG-ALLAVVYLG---LLKIAASNPPLPHEDPNMPLEKLPETRPVLLSGLHFLLPVVV 446
             ++G AL A+V LG   +LK++                            L     + +
Sbjct: 366 --MVGLALTAIVILGSAIILKVSN-------------------------YALRCAFWIAL 398

Query: 447 LVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLLSWMRHDRSHPDGTFMDGVIDLREGLI 506
            + C+   RL  G+      V  VI +L    +  W         GT    VI L   L+
Sbjct: 399 GLLCVGFFRLGIGV------VFAVIGVLV---VACWFM------QGTRETLVICL-HALV 442

Query: 507 AGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAFLSLILGM 566
            GAR+ + +GIA A  G I+  VS TGV    A  +  +   NLLL L+LT    L+LGM
Sbjct: 443 DGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGM 502

Query: 567 GLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAA 626
           G+PT  NYI+ SS+ AP ++ LG      VPLI  H+FVFYFGI+AD+TPPV LA FAAA
Sbjct: 503 GIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVALACFAAA 556

Query: 627 AVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLVFAA 686
            +++   ++    A   +L    +PF+ ++N  L+L G + W    + I   +A+ ++  
Sbjct: 557 PIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWMTAYMLIKTLLAVGLWGM 616

Query: 687 GTQGYFLVRSRWYESVL 703
            + GY   +   +E +L
Sbjct: 617 ASTGYLQQKMPIWERLL 633