Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  271 bits (692), Expect = 1e-76
 Identities = 221/748 (29%), Positives = 357/748 (47%), Gaps = 108/748 (14%)

Query: 9   EELIAQDVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLAF 68
           +EL   +V  R+  G +   I+ L +L SL  +W  +           ++    +IH A 
Sbjct: 7   QELEKFEVPTRTRFGWVTRTISVLCVLLSLAHIWFNT-------LSTWSELWISAIHFAG 59

Query: 69  ALLLAFLAYPAFKRSPRDRVPLV-DIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVT 127
             ++  L YPA  R    +V L  D+ L L+A A   YL +A   L +R     T D V 
Sbjct: 60  FAMICALWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVKFVTSDWVF 119

Query: 128 ACIGIPLLLEATRRALGPPLAIIALVFLVY-SVAGPWMPGLLAHRGVSFTALANHQWITT 186
           + + I +++E  RR +G  +  + L+ L Y SV G W  G+    G+S   L    + ++
Sbjct: 120 SILAILIVMEMIRRTMGWFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSS 179

Query: 187 EGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMT 246
           EG+FG    +S SFVF+F+LFGA L R+G G Y + ++ +  G   GGP   AV+ASG+ 
Sbjct: 180 EGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLM 239

Query: 247 GLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEY 306
           G +SGSS+AN V+TG  TIPMMK+ GF A  A  VE A+S  GQ+MPPVMGA AF+M  Y
Sbjct: 240 GSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASY 299

Query: 307 VGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIGFVFGAA 366
             IPYV+++  +F+PALI ++++ + V +E+ ++G+Q +  +   +P+M+ L+       
Sbjct: 300 TQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMGVQIVTTSQ--EPFMKVLLS------ 351

Query: 367 LISGLSLGVYYGLGW--LKPLLGDSALWVIG------ALLAVVYLGLLKIAASNPPLPHE 418
                        GW  L PL     L V+G      A L+++ + +    + N  +   
Sbjct: 352 -------------GWHNLIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKM--- 395

Query: 419 DPNMPLEKLPE------TRPVLLSGLHFLLPVVVL-----VWCLMIERLSPGLSAFWGSV 467
            P   +E L +      T  VLL G+  ++ V+        + LMI   +       G +
Sbjct: 396 GPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWAN------GDL 449

Query: 468 MLVIILLTQRPLLSWMRHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVG 527
           + +++L+T   L                                ++G+G+   AA I++G
Sbjct: 450 LTMLVLITLASL--------------------------------VLGMGLPVTAAYIVLG 477

Query: 528 AVSQTGVGLVLAD--LVELLSMGNL------LLMLLLTAFLSLILGMGLPTTANYIVVSS 579
            +S   +  +LA+  LV+L+  G L      + ML     LSL L   +     + ++S 
Sbjct: 478 TLSAPALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSL-LNAPMAAEKAHELISL 536

Query: 580 LLAPVIVALGQQN----GLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKGDPIR 635
           + A  +  L QQ+     + + L++ HL +F+    ++VTPPV L +FAAA ++K  P+R
Sbjct: 537 VPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMR 596

Query: 636 TGVTAFYYSLRTAALPFLFIFNTDLLLIGVDFWHGVLIFIVATIAMLVFAAGTQGYFLVR 695
           TG TA+  +     +P L  +     LI  D    V I I A           +GY   R
Sbjct: 597 TGFTAWKIAKGLYLVPVLIAYTQ---LISWDVATVVTIGIFAIFGTYAMIGAIEGYLEGR 653

Query: 696 SRWYESVLLLLVAFTLFRPG--FWMDMI 721
                 +LL ++   L  P    W+ ++
Sbjct: 654 LNLLWRLLLAVIGVLLVWPSLPIWIRLV 681