Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 453 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 65.1 bits (157), Expect = 9e-15
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 18/208 (8%)

Query: 150 IALVFLVYSVAGPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSF--------V 201
           +AL+F++  V G  + G+     +  +++    W +   +  +A  +  +F        +
Sbjct: 3   VALLFIL--VIGMMIVGVPIAISLGLSSILFLLWHSDASLASVAQTLFNAFAGHYTLLAI 60

Query: 202 FLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTG 261
             F+L    +   G     I+ A +M+G FRGG A A+VVA  M   +SGSS A VV  G
Sbjct: 61  PFFILASTFMSTGGVAKRIIRFAIAMVGWFRGGLAIASVVACMMFAALSGSSPATVVAIG 120

Query: 262 TFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEV---IKHA 318
           +  I  M + G+S E A  V   +   G ++PP     + +MV Y     V V       
Sbjct: 121 SIVIAGMVKNGYSKEFAAGVICNAGTLGILIPP-----SIVMVVYSAATNVSVGRMFLGG 175

Query: 319 FLPALISYIALIYIVHLESMKLGLQALP 346
            +P L++ + LI  +++ +    L   P
Sbjct: 176 VVPGLLAGLMLIIAIYITARIKNLPKQP 203



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 500 DLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAF 559
           D +  L    +  I +    A A I+   +++  +  ++ + +    +G +  ++++   
Sbjct: 284 DTKATLYDAGKLTIMLMFIIANALILKHVLTEERIPQMITESMLSAGLGPITFLIVVNLI 343

Query: 560 LSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIM--ADVTPP 617
           L L+ G  +  +   ++V+ L+ P+ +ALG        +  +HL +     M    +TPP
Sbjct: 344 L-LVGGQFMEPSGLLVIVAPLVFPIAIALG--------IDPIHLGIMMVVNMEIGMITPP 394

Query: 618 VGLASFAAAAVSK 630
           VGL  F  + V+K
Sbjct: 395 VGLNLFVTSGVAK 407