Pairwise Alignments
Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2
Subject, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056
Score = 58.9 bits (141), Expect = 6e-13
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 204 FVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTGTF 263
FVL G L+ AG A S++GH G ++AS + +SGS++A+ G
Sbjct: 60 FVLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIMASLLFSGMSGSALADAGGLGQL 119
Query: 264 TIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFLPAL 323
I M+ + + AG + AS + G ++PP + + +V I + +P L
Sbjct: 120 EIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIYGVVSNTSIG--ALFLAGAIPGL 177
Query: 324 ISYIALIYIVHLESMKLGLQALPRAN 349
+ IAL+ + + K G LP+A+
Sbjct: 178 LCCIALMVMSYFICKKRGYMTLPKAS 203
Score = 34.7 bits (78), Expect = 1e-05
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 35/160 (21%)
Query: 519 TAAAGIIVGAVSQTGVGLVLADLVELLS------MGNLLLMLLLTAFLSLILGMGLPTTA 572
TA ++V V+ G + L ++L+ N L++LLL L L LG + + A
Sbjct: 273 TAVVALMVMGVTVFGWIVAREQLPQMLADYFLTISDNPLVLLLLINLLLLFLGTFIESLA 332
Query: 573 NYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMA-------DVTPPVGLASFAA 625
+++ L PV A+G I P+ +FG+MA +TPP+G+A +
Sbjct: 333 LLLLLVPFLVPVASAVG-----IDPV--------HFGVMAILNLMIGILTPPMGMALYVV 379
Query: 626 AAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDLLLIGV 665
+ V GD +++L LP L L L+ V
Sbjct: 380 SRV--GD-------IPFHTLTRGVLPLLVPLFIVLALVAV 410
Score = 28.5 bits (62), Expect = 8e-04
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 253 SIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYV 312
S+A ++ F +P+ G G + + + + G + PP MG A +++ IP+
Sbjct: 330 SLALLLLLVPFLVPVASAVGIDPVHFGVMAILNLMIGILTPP-MGMALYVVSRVGDIPF- 387
Query: 313 EVIKHAFLPALISYIALIYIV 333
+ LP L+ ++ +V
Sbjct: 388 HTLTRGVLPLLVPLFIVLALV 408