Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 854 a.a., DUF3394 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

 Score =  939 bits (2426), Expect = 0.0
 Identities = 485/846 (57%), Positives = 622/846 (73%), Gaps = 14/846 (1%)

Query: 9   EELIAQ-DVGARSPAGPMAAVIAGLALLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLA 67
           +E++AQ D GAR+P G    V+  + L WSLFQLW ASPLPF+  FGVLNDT+ RSIHL 
Sbjct: 12  QEMVAQADTGARAPKGLPGRVLWFVPLCWSLFQLWYASPLPFIFDFGVLNDTQARSIHLT 71

Query: 68  FALLLAFLAYPAFKRSPRDRVPLVDIALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVT 127
           FA+ LAF AYPA K SPRDR+PL D  L L  + SAAY+++ Y++LA R G  T  D++ 
Sbjct: 72  FAVFLAFTAYPAMKGSPRDRIPLTDWLLALAGSFSAAYIYLFYAELAGRSGAPTQFDVIA 131

Query: 128 ACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALANHQWITTE 187
           + +G+ LLLEATRRALGPPL ++A +FL+Y+ AGP+MP ++AH+G S     +H W+TTE
Sbjct: 132 SVVGMVLLLEATRRALGPPLMMVAALFLLYTFAGPYMPDVIAHKGASLNKAMSHLWLTTE 191

Query: 188 GVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTG 247
           GVFG+ALGVSTSFVFLFVLFGA+LERAGAG YFI++AFSMLGH RGGPAKAAVVASG++G
Sbjct: 192 GVFGVALGVSTSFVFLFVLFGAMLERAGAGAYFIKVAFSMLGHMRGGPAKAAVVASGLSG 251

Query: 248 LISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYV 307
           L+SGSSIANVVTTGTFTIP+MKR GF   KAGAVEVA+S NGQ+ PP+MGAAAFLMVEYV
Sbjct: 252 LVSGSSIANVVTTGTFTIPLMKRVGFPGTKAGAVEVAASTNGQLTPPIMGAAAFLMVEYV 311

Query: 308 GIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLIGFVFGAAL 367
           GI YVEVIK A LPALISYIALIYIVHLE+ K G+  LPR + +    Q+L+ F      
Sbjct: 312 GISYVEVIKAAILPALISYIALIYIVHLEACKAGMSGLPRRHQSTV-AQKLLSFTATILG 370

Query: 368 ISGLSLGVYYGLGWLKPLLGDSALWVIGALLAVVYLGLLKIAASNPPLPHE----DPNMP 423
           +  +S  VYYG+GW K   GD+A  ++  +L   Y+GL+KI+A   P   E    D N  
Sbjct: 371 LCVISAVVYYGIGWTKEAFGDAATPILTVVLLAAYVGLVKISA---PYAKEGLGIDEN-- 425

Query: 424 LEKLPETRPVLLSGLHFLLPVVVLVWCLMIERLSPGLSAFWGSVMLVIILLTQRPLLSWM 483
           L+ +P+  P L SGLH+LLP+VVLVWCL +ER SPGLSAFW SV ++ ILLTQRPL++  
Sbjct: 426 LQYVPDVAPTLKSGLHYLLPIVVLVWCLTVERFSPGLSAFWASVFMIFILLTQRPLMALF 485

Query: 484 RHDRSHPDGTFMDGVIDLREGLIAGARNMIGIGIATAAAGIIVGAVSQTGVGLVLADLVE 543
               S  D    +GV DL E L++GARNMIGIG+ATAAAG +VG V+ TG+GLV+ D VE
Sbjct: 486 NRTGSLGDAA-KEGVTDLLESLVSGARNMIGIGVATAAAGTVVGVVTLTGIGLVMTDFVE 544

Query: 544 LLSMGNLLLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHL 603
            +S GNL+LML+ TA +SLILGMGLPTTANYIVVS+L+APVIV LG ++GLI+PLIAVHL
Sbjct: 545 FISGGNLMLMLIFTAVISLILGMGLPTTANYIVVSTLMAPVIVTLGAEHGLIIPLIAVHL 604

Query: 604 FVFYFGIMADVTPPVGLASFAAAAVSKGDPIRTGVTAFYYSLRTAALPFLFIFNTDLLLI 663
           FVFYFGI+AD TPPVGLA+FAAAA++K DPIRTG+  F Y +RTA LPF+F+FNT LLL+
Sbjct: 605 FVFYFGILADDTPPVGLAAFAAAAIAKSDPIRTGIQGFAYDIRTAILPFMFVFNTQLLLM 664

Query: 664 GVD-FWHGVLIFIVATIAMLVFAAGTQGYFLVRSRWYESVLLLLVAFTLFRPGFWMDMIH 722
           G+D +WH +L  + +  AML+F+A TQG++L +++W+E V LL++ FT FRPGFW DM++
Sbjct: 665 GIDSWWHLMLTILSSITAMLLFSAATQGWWLTKTKWWEVVALLVLTFTFFRPGFWWDMVY 724

Query: 723 DPYQEIPPAQLVEALGNVDEDSQLRLRVLGEDAVGDPREFVLLLAIPDGA-SGEEKLEKI 781
                    +L + +        +++ V GE+  G+     + L   D A S +E++  +
Sbjct: 725 PAQVMYAGTKLEQIVEQAPVGQPIQMIVAGENLKGEYTSKTVQLPFEDRAVSAQERIASM 784

Query: 782 GLLTYEEDGKLLVDSVTFGSPAAEAGLEFDQQILSVRAPTDRWPKELMWAPGFLLFALIV 841
           GL    +  ++LV+ V FGSPA  AG++FD +I SV   +DR  KE ++ P  LL  L+ 
Sbjct: 785 GLTLLNDKNRMLVEMVEFGSPAEAAGIDFDWEIRSVVVDSDRPMKEWVFLPAILLTLLLA 844

Query: 842 WMQRRR 847
           W Q+RR
Sbjct: 845 WNQKRR 850