Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 425 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 64.3 bits (155), Expect = 1e-14
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 6/178 (3%)

Query: 203 LFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTGT 262
           LF+  G L+  +G      + A++++G   GG A+  V  S +   +SG+++A++   G 
Sbjct: 59  LFIFVGNLMNLSGITDRIFRFAYTLVGRMPGGLAQVNVFGSLIFSGMSGAALADIGGLGR 118

Query: 263 FTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFLPA 322
             I  MK+ GF    AGAV  AS+  G I PP +    +  V  V I  V+++    +PA
Sbjct: 119 IEIDAMKKRGFDPSFAGAVTAASATLGPIFPPSIPLIVYGSVTSVSI--VQLLVAGIMPA 176

Query: 323 LISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLI----GFVFGAALISGLSLGVY 376
           ++    L+  V + +++ G     R   A   +  L+      +  A ++ G++ G +
Sbjct: 177 VLCTALLMLTVLIVAIRHGHARAERWPTAGELVGTLVPALPAILAPALMVGGMTAGAF 234



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 551 LLMLLLTAFLSLILGMGLPTTANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGI 610
           L++L++   +  + GM L +T   +++  ++AP +V  G      V L  V +F    G+
Sbjct: 312 LMLLIIANLIFFVAGMFLDSTTATLLLVPIIAPPLVMAGVDP---VQLGIVTIFNLMLGL 368

Query: 611 MADVTPPVGLASFAAAAVSK 630
           +   TPP+GL+ F  + ++K
Sbjct: 369 L---TPPMGLSLFLVSDIAK 385