Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 827 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  836 bits (2160), Expect = 0.0
 Identities = 424/789 (53%), Positives = 573/789 (72%), Gaps = 13/789 (1%)

Query: 34  LLWSLFQLWIASPLPFVLGFGVLNDTETRSIHLAFALLLAFLAYPAFKRSPRDRVPLVDI 93
           + WSLFQLW ASPLPFV GFG+LNDTE R+IHL FAL L FLAYPA K SPRDRVPL D 
Sbjct: 1   MAWSLFQLWYASPLPFVFGFGILNDTEARAIHLGFALFLTFLAYPALKSSPRDRVPLADW 60

Query: 94  ALGLVAAASAAYLFIAYSQLAQRPGNLTTMDLVTACIGIPLLLEATRRALGPPLAIIALV 153
            LG + A + AYLF+ Y +LA RPG  +T+DLVT   GI LLLEATRRALG P+  +A V
Sbjct: 61  VLGALGAFAGAYLFLFYGELAGRPGQPSTLDLVTGTAGILLLLEATRRALGLPMVFVAGV 120

Query: 154 FLVYSVAGPWMPGLLAHRGVSFTALANHQWITTEGVFGIALGVSTSFVFLFVLFGALLER 213
           F+ Y+ AG +MP ++ HRG S     NHQW+TTEGVFGIALGVSTSFVFLFVLFG LLE+
Sbjct: 121 FIFYTFAGQYMPDVIQHRGASLVKFINHQWLTTEGVFGIALGVSTSFVFLFVLFGTLLEK 180

Query: 214 AGAGHYFIQLAFSMLGHFRGGPAKAAVVASGMTGLISGSSIANVVTTGTFTIPMMKRTGF 273
           AGAG++ +Q++ ++LGH RGGPAK AVV+S + G++SGSS++NVV+ G FTIP+MKRTG 
Sbjct: 181 AGAGNWMMQISIALLGHLRGGPAKVAVVSSALNGVVSGSSVSNVVSGGIFTIPLMKRTGL 240

Query: 274 SAEKAGAVEVASSVNGQIMPPVMGAAAFLMVEYVGIPYVEVIKHAFLPALISYIALIYIV 333
           S  KAGA+E ++S+NGQIMPPVMGAAAFLMVEYVGIPY E++KHA LPA+ SYIAL+Y+V
Sbjct: 241 SGVKAGAIEASASINGQIMPPVMGAAAFLMVEYVGIPYSEIVKHALLPAVFSYIALLYMV 300

Query: 334 HLESMKLGLQALPR--ANVAKPWMQRLIGFVFGAALISGLSLGVYYGLGWLKPLLGDSAL 391
           HLE++KL +Q +P+    + + W++  +G   G+ L   L   +YYG+  ++   G+SA 
Sbjct: 301 HLEAVKLNMQPIPQRPTPMRERWLRMGLGLA-GSVLAICL---LYYGIIAIRAAFGESAP 356

Query: 392 WVIGALLAVVYLGLLKIAASNPPLPHEDPNMPLEKLPETRPVLLSGLHFLLPVVVLVWCL 451
            ++      +Y+  +  ++  P L  +DP+ P+ +LP    V  +GL FL+P+VVL+WCL
Sbjct: 357 LLLAIAGVALYIATIWYSSRYPDLELDDPDAPILELPRAWDVTRTGLDFLIPIVVLLWCL 416

Query: 452 MIERLSPGLSAFWGSVMLVIILLTQRPLLSWMRHDRSHPDGTFMDGVIDLREGLIAGARN 511
           M+E+LSPGLSAFW ++ ++ I+ T++PL++  R  +    G+      DL +GL  GARN
Sbjct: 417 MVEQLSPGLSAFWATLTIIAIVATRKPLMAIFR--KEDVAGSVRAAAWDLTDGLALGARN 474

Query: 512 MIGIGIATAAAGIIVGAVSQTGVGLVLADLVELLSMGNLLLMLLLTAFLSLILGMGLPTT 571
           MIGI +ATA AGI+VG ++ TG+GL++ +LVE +S GN+++ML+L A +SL+LGMG+PTT
Sbjct: 475 MIGIAVATATAGIVVGTITLTGLGLMMTELVEFISGGNVIMMLILIAAISLVLGMGIPTT 534

Query: 572 ANYIVVSSLLAPVIVALGQQNGLIVPLIAVHLFVFYFGIMADVTPPVGLASFAAAAVSKG 631
           ANYI+V++L+APV+V LG Q GL +PLIAVHLFVFYFGIMAD+TPPVGLA+FAAAA+SK 
Sbjct: 535 ANYILVATLMAPVVVELGSQAGLAIPLIAVHLFVFYFGIMADITPPVGLAAFAAAAISKE 594

Query: 632 DPIRTGVTAFYYSLRTAALPFLFIFNTDLLLIGVDFW-HGVLIFIVATIAMLVFAAGTQG 690
           DPI TG     YSLRTA LPF+FIFN  +LLIGVD W H + +  ++  A+L+F+A T  
Sbjct: 595 DPIATGFQGALYSLRTAILPFVFIFNPAILLIGVDTWAHTIWVAAISLAAILIFSAATMN 654

Query: 691 YFLVRSRWYESVLLLLVAFTLFRPGFWMDMIHDPYQEIPPAQLVEALGNVDEDSQLRLRV 750
           +F+ +SR +ES +LLLV FTLFRP +W++ I  PY+E+P ++ + A+      S++   V
Sbjct: 655 WFVTKSRLWESAVLLLVCFTLFRPDWWLNQISPPYEELPASEFLRAVEEAPAKSRINFVV 714

Query: 751 LGEDAVGDPREFVLLLAIPDGASGE--EKLEKIGLLTYEEDGKLLVDSVTFGSPAAEAGL 808
            G D +GD  E    + +P G  GE  ++L+ IGL        L++ +V FGS A   GL
Sbjct: 715 QGFDLMGD--EVRKTVNVPLGEPGEPLQRLQSIGLTVTPAGESLMISNVDFGSYAKRIGL 772

Query: 809 EFDQQILSV 817
           +    I++V
Sbjct: 773 DVGFDIVAV 781