Pairwise Alignments

Query, 850 a.a., TRAP transporter, 4TM/12TM fusion protein from Pseudomonas stutzeri RCH2

Subject, 501 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 27/280 (9%)

Query: 120 LTTMDLVTACIGIPLLLEATRRALGPPLAIIALVFLVYSVAGPWMPGLLAHRGVSFTALA 179
           +T +++  A   + ++L   R  +G  + ++ LV L+    G           V+F  + 
Sbjct: 1   MTALEIGIASFPVLMMLIFLRVPIGLSMFLVGLVGLIIVTDGTQ---------VAFGRMK 51

Query: 180 NHQWITTEGVFGIALGVSTSFVFLFVLFGALLERAGAGHYFIQLAFSMLGHFRGGPAKAA 239
           +  + T           S + V +F+L G      G      + A   LGH +GG A AA
Sbjct: 52  SETYSTFSSY-------SLTIVPMFLLMGHFATLGGMSTALFKAAEGFLGHKKGGVAMAA 104

Query: 240 VVASGMTGLISGSSIANVVTTGTFTIPMMKRTGFSAEKAGAVEVASSVNGQIMPPVMGAA 299
           + A    G I GSS+A   T G   +P ++  G++   + A   A    G ++PP +   
Sbjct: 105 IGACAGFGAICGSSLATAATMGRVALPELRNYGYAGGFSTATLAAGGTLGILIPPSVVLV 164

Query: 300 AFLMVEYVGIPYVEVIKHAFLPALISYIALIYIVHLESMKLGLQALPRANVAKPWMQRLI 359
            + ++    I   ++   AF+P +++ I  +  + +        A  R  V  PW +R  
Sbjct: 165 IYAILTEQNI--AKLFLAAFIPGILAAIGYVIAISIYVRVFPGSAGTRPPV--PWGERFA 220

Query: 360 GF--VFGAALISGLSLGVYYGLGWLKPLLGDSALWVIGAL 397
               V+   L+ GL +G  Y LGW  P  G +    +GAL
Sbjct: 221 ALFHVWPVLLVFGLVVGGIY-LGWFTPTEGAA----VGAL 255