Pairwise Alignments

Query, 448 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  271 bits (693), Expect = 3e-77
 Identities = 165/443 (37%), Positives = 238/443 (53%), Gaps = 16/443 (3%)

Query: 13  LVDDEAAILRTFRYCLEDRGYTVMTAASAAQAEAILQRQVFDLCFLDLRLGEDNGLDVLQ 72
           +V+D A++   +R  L      +    +   A   + R+  DL  LDLRL +  G+DVL 
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60

Query: 73  QMRMLAPWMRVVIVTVHSAVDTAVDAMQAGAADYLLKPCSPEQLRLSAAKQLEVRQMAAR 132
            ++  +P + +V +T H ++DTAV+AM+ GA D+L+KPC  ++LR++    +   + A++
Sbjct: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI---RKASK 117

Query: 133 LEALEGEIKQRSDALGSHSPAMMAVLETARQVADTDANILILGESGTGKGELARAIHTWS 192
           L+       Q        S  M AV  T    A + A+I I GESGTGK   A AIH  S
Sbjct: 118 LKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAAS 177

Query: 193 RRSKKAFVTINCPSLSADLMESELFGHNRGAFTGATESTLGRVNQADGGTLFLDEIGDFP 252
           +R  K F+ INC ++  DL+ESELFGH +GAFTGA     G    ADGGTLFLDE+ +  
Sbjct: 178 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMD 237

Query: 253 LALQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVREGKFREDLLYRLNVIT 312
           L LQ KLLRFIQ   +++VG    +  DVR + ATN +  + V+EG+FREDL YRL VI 
Sbjct: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297

Query: 313 LNLPPMRERPEDVLALAERFLASFVKNYGRPARGFSDAAIAALKTYRWPGNVRELRNVVE 372
           L+LPP+R R +DV+ +A   L    K  G+     S   +   + Y WPGNVR+L+NV+ 
Sbjct: 298 LHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLR 357

Query: 373 RASIICPQQMIEVSHL--GLGEQ----------VGSNAPRIGEPLSLEALEKAHIAGVLS 420
              ++   + I +  L   L +              N   + E   L   EK  I   + 
Sbjct: 358 NVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIE 417

Query: 421 TSD-TLEQAARILGIDASTLYRK 442
             D  + +AA  L +  ST+YRK
Sbjct: 418 ACDGNIPRAATYLDVSPSTIYRK 440