Pairwise Alignments

Query, 726 a.a., Predicted N6-adenine-specific DNA methylase from Pseudomonas stutzeri RCH2

Subject, 380 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 72.8 bits (177), Expect = 3e-17
 Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 43/279 (15%)

Query: 437 ARREGIECYRLYDADMPEYA-LAIDLYRDWVHVQEYAPPRSIDPDKAQARLLDALAAIPQ 495
           A ++  +C+R++   +   + L +D Y D   VQ +    +++       L + +A + Q
Sbjct: 66  AEQDHTDCFRVFHGTVEGISGLNVDRYGDTWLVQSFHQTLTVE------ELAEIVAVLTQ 119

Query: 496 ALGIAREKVVVKRRERQSGTRQYERQATQGEFLEVA-------EGGVKLLVNLT-DYLDT 547
            + +      V   +R +G  +    A   E  ++A       E G+K    L  +  D 
Sbjct: 120 EMDLP-----VVYNDRSAGHSRV-LNALSPELDDIACAELVMQENGIKFTTKLRHEGQDP 173

Query: 548 GLFLDHRPLRLRIQREAAGKRFLNLFCYTATATVHAAKGGARSTTSVDLSKTYLDWARRN 607
            LFLD R  R  ++  +  K  LNLF YT      AA GGA    +VD S   L   R N
Sbjct: 174 LLFLDMRIGREYVRAHSQDKTVLNLFSYTCGIGTAAAMGGAERVVNVDFSSFALAAGRTN 233

Query: 608 LALNGLSDRQRLEQGDVMAWLEEDRG--------------------EYDLIFIDPPTFSN 647
             LN +S+     Q D    L +  G                    ++DL+F+DPP +  
Sbjct: 234 AELNQVSEVCEFVQSDAFPALRQLAGLSVGGRRNHKLPSYPKLAQTQFDLVFLDPPRY-- 291

Query: 648 SKRMEGVFDVQRDHLALLDLAMARLAAGGTLYFSNNFRK 686
           +K   G+ D+  D+  L   A+     GGT+   NN  K
Sbjct: 292 AKSAFGIVDLVNDYQGLFKPALLSTKTGGTIVCCNNVAK 330