Pairwise Alignments

Query, 595 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

 Score =  128 bits (322), Expect = 9e-34
 Identities = 106/399 (26%), Positives = 188/399 (47%), Gaps = 44/399 (11%)

Query: 227 ELSSLSRRFGLMAQALHEFK------QTNVEALVNGQQRLQALLDSIDDGLLIIDRDGRL 280
           +L  L  +   +   ++EF       + +   L N +++ + L +      ++ +  GRL
Sbjct: 320 KLMDLDTKSEFIGSKIYEFDYFGRTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRL 379

Query: 281 EHANPVAQRQLAWEN--EHLGSTLGEALGHPELDNAARQVLDDKSLSDPPEDLIIEADGE 338
              NP AQ Q   E+   H    + E    P + NAA+         + P D+  E DG 
Sbjct: 380 IRMNPSAQIQFLREDAQNHFLFEILERQLLPTITNAAQ--------GNNPSDVTTEVDG- 430

Query: 339 RRLLAWRISPVSHHDGSISGAVMVLHDVTDQRTFE--------------RVRNEFVLRAS 384
            R+  W +SP+   +G I   +    D+T     E              RVR EF+ + S
Sbjct: 431 -RVYRWNLSPIMV-EGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMS 488

Query: 385 HELRTPVTGMQMAFSLLRERLRYPAGSRESDLFDTVHEEMQRLVRLINDLLNFSRYQSGQ 444
           HELRTP+ G+     LL+   R P    + +    +    + L+ ++ND+L+FSR + G+
Sbjct: 489 HELRTPLNGVLGVSQLLK---RTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGK 545

Query: 445 QKLELEQCDIPELLEAARQRFEVAANEQDVQLKLELQQPLPTLM-LDRQQIERVMDNLLS 503
            +++  +  + EL+ A  + +    NE+ ++L +        ++  D+ +I +++ NLL+
Sbjct: 546 FRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLN 605

Query: 504 NALRHTPKGG---EVRLLARHHGERMILSVEDNGEGIPYSQQARIFEPFVQ----IGRRR 556
           NA++ T +G    E++L+      ++++ V D G GI       IFEPF+Q      R  
Sbjct: 606 NAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREY 665

Query: 557 GGAGLGLALCKEIAQLHGGRIGVHSRIGHGTIFYVALPI 595
           GG+GLGL +   + ++  G++ V S  G GT F + LPI
Sbjct: 666 GGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPI 704