Pairwise Alignments

Query, 595 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 433 a.a., two-component system sensor histidine kinase PhoR from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (319), Expect = 9e-34
 Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 20/348 (5%)

Query: 253 LVNGQQRLQALLDSIDDGLLIIDRDGRLEHANPVAQRQLAWE-NEHLGSTLGEALGHPEL 311
           L N  +R +   +S+ D +++   +G +   N +AQ  L +   +  G  +   L  P+ 
Sbjct: 93  LTNLIRRFRNGAESLPDAVVVFRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTPDF 152

Query: 312 DNAARQVLDDKSLSDPPEDLIIEADGERRLLAWRISPVSHHDGSISGAVMVLHDVTDQRT 371
               ++  DD   +DP E  +       R+L  RI P +  +      +MV+ DVT  + 
Sbjct: 153 IKYLKK--DD--FTDPLE--MRSPLNSDRMLELRIVPYTEGEH-----LMVVRDVTQLKQ 201

Query: 372 FERVRNEFVLRASHELRTPVTGMQMAFSLLRERLRYPAGSRESDLFDTVHEEMQRLVRLI 431
            E +R  F    SHELRTP+T +Q  +  + E     AG   S     + E++ R+  L+
Sbjct: 202 LEGMRRNFFANVSHELRTPMTVLQ-GYLEMTEDPDVLAGPMWSKAHGVMTEQLNRMNGLV 260

Query: 432 NDLLNFSRYQSGQQKLELEQC-DIPELLEAARQRFEVAANEQDVQLKLELQQPLPTLMLD 490
           N LL  S+ ++    +EL+Q  D+P +LE   +     + E   +L  E+ + L  L  D
Sbjct: 261 NQLLTLSKIEASPM-VELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSLKVLA-D 318

Query: 491 RQQIERVMDNLLSNALRHTPKGGEVRLLARHHGERMILSVEDNGEGIPYSQQARIFEPFV 550
             Q+   + NL+ NA+++TP G ++ +     G+   L VED GEGI      R+ E F 
Sbjct: 319 EDQLRSAISNLVYNAVKYTPPGAQIDVRWYRTGKGACLEVEDKGEGIEPQHLHRLTERFY 378

Query: 551 QIGRRR----GGAGLGLALCKEIAQLHGGRIGVHSRIGHGTIFYVALP 594
           ++ + R    GG+GLGLA+ K     H   + ++S++G G+ F   LP
Sbjct: 379 RVDKARSRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426