Pairwise Alignments

Query, 305 a.a., ABC-type sugar transport systems, permease components from Pseudomonas stutzeri RCH2

Subject, 292 a.a., permease protein of sugar ABC transporter from Synechococcus elongatus PCC 7942

 Score =  136 bits (342), Expect = 7e-37
 Identities = 87/272 (31%), Positives = 138/272 (50%), Gaps = 10/272 (3%)

Query: 24  PKLVLAPSMLIVLVGFYAY----IGWTFLLSFT-NSRFMPSYKWVGLQQYERLWDNDRWW 78
           P+ +  P++L +  G +AY      W  L +   N++  P +  +GL  Y+RLW + R+W
Sbjct: 5   PRWLTIPALLTI-TGVFAYPLLRAAWLSLQALNLNTQLQPVF--IGLANYQRLWGDSRFW 61

Query: 79  VASQNLLVFGGLFIAVSLIIGVVLAVLLDQRIRREGLIRTIYLYPMALSMIVTGTAWQWL 138
               N  VF    +++ L++G+ +A+LL Q  R  G +RTI L P  L   V    W W+
Sbjct: 62  GDLFNTTVFTVTSVSLELVLGLAIALLLHQPSRWRGPLRTIALLPWVLPTAVMALGWAWI 121

Query: 139 LNPGLGL-DKLLRDWGWEGFRFDWLVDPDRVIYCLVIAAVWQASGFVMALFLAGLRSVDQ 197
            N   G+ +  L+  GW     +WL +P      LV A VW+ + FV  L LAG +++ +
Sbjct: 122 FNDPYGVWNDWLQQLGWIAAPINWLGNPRWAWLTLVAADVWKTTPFVAILLLAGRQAIPE 181

Query: 198 SIIRAAQVDGASLPTIYLRIVLPSLRPVFFSALMILAHIAIKSFDLVAAMTAGGPGYSSD 257
            +  A  ++GA+    + +I LP LRP    AL+  +  A   FDLV  MT GGP  S++
Sbjct: 182 DLYEAHCLEGATAWQSFWQITLPLLRPQLAIALLFRSAQAFGLFDLVKVMTGGGPANSTE 241

Query: 258 LPAMFMYAHTFTRGQMGLGAASAMLMLGAVMA 289
             A++ Y         G GA  A ++  A++A
Sbjct: 242 TLALYAYTTALRYLDFGYGATLA-IVTAAILA 272