Pairwise Alignments

Query, 450 a.a., type I secretion membrane fusion protein, HlyD family from Pseudomonas stutzeri RCH2

Subject, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  365 bits (936), Expect = e-105
 Identities = 189/452 (41%), Positives = 286/452 (63%), Gaps = 19/452 (4%)

Query: 18  DTEYMPEIQGAILEDSPWLARLTVWLTALLLAAVLIWANYAVLEEVTTGEGKAIPSSKIQ 77
           D + + ++ GA++ D+P   RL +W  A ++A  L+WA +A L+ VTTG GK IPSS++Q
Sbjct: 33  DLDMVDDVYGAMMTDAPSGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQ 92

Query: 78  TVQNLEGGIVAQIYVREGQVVNKGDTLLRLDNTRFLSNQEETEAERLSLLARVERLAAEA 137
            +Q+L+GGI+ +++VR+G +V KG  L+R+D+TRF S+  + E E   L     R+ AE 
Sbjct: 93  VIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAEL 152

Query: 138 EG------------------RPLALPEEITRDAPQLAEDERALYESRQQRLRSEQRILKE 179
           +                   + L  P+ I +  P L + ++  Y  R   L ++  IL  
Sbjct: 153 DSILISDMTSDWREQVKITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVR 212

Query: 180 QLTQKQQEVAEFRSKQQQYRSSLSLIQQELNMSTPLVETGAISQVEILRLRRSIVDVRGA 239
           Q+ Q+QQE+ +  SK     +S+ LI +EL ++ PL + G + +VE+L+L R++ D +G 
Sbjct: 213 QIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGE 272

Query: 240 LDATTLALPRAEAAASEIQSRIEQSELAFRAEAFKDLNAARTLLQKITATSVAIDDRVSR 299
           L++  L  P+ +AA  E   +  ++   + A+    LN  +T L ++    V   D+VS+
Sbjct: 273 LNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSK 332

Query: 300 TTVVSPVHGIIKQLRINTIGGVVQPGSDLLEIVPLEDSLLIEAKVRPQDIAFLHPGQKAM 359
             + SPV+G IK + INT+GGVVQPG D++EIVP ED LLIE K+ P+DIAFLH G  A+
Sbjct: 333 AIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAV 392

Query: 360 VKFSAYDYTIYGGLKANLELISADTITDKDGRSFYLIQVRTEKNYL-GSPGHQLVIIPGM 418
           VK +AYD+T YGGLK  +E ISADT  D++G SFYLI+VRTE++ L    G Q+ IIPGM
Sbjct: 393 VKVTAYDFTRYGGLKGTVEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGTQMPIIPGM 452

Query: 419 VATVDIITGEKSVLDYMLKPILKARHEALRER 450
           + TVD+ITG++S+L+Y+L PIL+A+  ALRER
Sbjct: 453 LTTVDVITGQRSILEYILNPILRAKDTALRER 484