Pairwise Alignments

Query, 146 a.a., Universal stress protein UspA and related nucleotide-binding proteins from Pseudomonas stutzeri RCH2

Subject, 310 a.a., universal stress protein family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 15/131 (11%)

Query: 19  VVARAQVLASTSGAKLSLVHIIE--PMAMA-----FGGDVPMDLSMLQQQQFDQARGRMN 71
           ++  A+ LA    A++ LV+     P+ +A     F      D   LQ +Q      R+ 
Sbjct: 176 IIEHAKDLAGKFAAEVHLVNGFPGTPVNLAIELPDFDAQTYNDTIRLQHEQ------RVQ 229

Query: 72  GFADSYPGLAPENRHLAYGQPRQEVHRLAKEQGCDLIVVGSHGRHGL-ALLLGSTANDIL 130
             AD+Y G+  +N H+  G P   +  LA++   +L+++G+ GR G  A L+G+TA  ++
Sbjct: 230 YLADAY-GIDKQNCHVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTAEHVI 288

Query: 131 HGAPCDVLAVR 141
               CD+LA++
Sbjct: 289 DSINCDLLAIK 299



 Score = 36.6 bits (83), Expect = 4e-07
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 4/143 (2%)

Query: 3   YKHILVAIDLTEECHPVVARAQVLASTSGAKLSLVHIIEPMAMAFGGDV-PMDLSMLQQQ 61
           Y+ ILV +D T E    +ARA  LAS S A +++   I   +      +   +   ++Q 
Sbjct: 4   YQKILVVVDPTTENQVALARAVTLASKSNAHVTVFLSIFDFSYEMTSILSSQEREAMRQG 63

Query: 62  QFDQARGRMNGFADSYP--GLAPENRHLAYGQPRQEVHRLAKEQGCDLIVVGSHGRHGL- 118
             DQ    +      Y   GL  + + + + +P + +   A     DLIV G+H    L 
Sbjct: 64  VIDQRVAWIQDLLAPYNHLGLNIDTQVIWHNRPFESIINHAIAGQYDLIVKGTHAHDKLK 123

Query: 119 ALLLGSTANDILHGAPCDVLAVR 141
           A++   T   ++  AP  VL V+
Sbjct: 124 AVIFTPTDWHLMRKAPVPVLMVK 146