Pairwise Alignments

Query, 280 a.a., Flagellar motor protein from Pseudomonas stutzeri RCH2

Subject, 294 a.a., Flagellar motor rotation protein MotB from Pseudomonas fluorescens FW300-N2E2

 Score =  390 bits (1002), Expect = e-113
 Identities = 194/278 (69%), Positives = 233/278 (83%), Gaps = 3/278 (1%)

Query: 1   MGRRRAPEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQVD 60
           M RRR  EEH NHERWLVSYADFITLLFAFFVVMYSISS+NEGKYK++S++L+GVF   D
Sbjct: 1   MARRRHHEEHVNHERWLVSYADFITLLFAFFVVMYSISSVNEGKYKVISEALIGVFTDSD 60

Query: 61  RSVKPIPIGEERPRTTEPDVSQV-DDPAAQSVLSGEPVFDPLERIAQSMRETFGELIANE 119
           R++KPIPIGEERP+TT P    V D    ++ ++G    DPL+ IA  +   FG+LI++ 
Sbjct: 61  RALKPIPIGEERPKTTTPAKPLVKDSEQVEAGIAGSS--DPLKSIADDISAAFGDLISSN 118

Query: 120 QLTVRGNELWIEIELNSSLLFPSGDALPNDHAFALIEKVAGILAPFDNPIHVEGFTDNLP 179
           Q+TVRGNELW+EIELNSSLLF SGDA+P+D AF +I+KVA IL PFDNPIHVEGFTD+ P
Sbjct: 119 QMTVRGNELWVEIELNSSLLFGSGDAMPSDMAFNIIDKVAAILKPFDNPIHVEGFTDDQP 178

Query: 180 ISTDKFPTNWELSAARAGSVVRMLAAQGVDPSRLAAVGYGEFQPVADNATAAGRARNRRV 239
           I T ++PTNWELS+AR+ S+VRMLA QGV P RLA+VGYGEFQPVA+NATA GRARNRRV
Sbjct: 179 IRTAQYPTNWELSSARSASIVRMLAMQGVSPGRLASVGYGEFQPVANNATAEGRARNRRV 238

Query: 240 ILVVSRNLDVRRSVSGMGSSNARPDDALRRAGTQPAPA 277
           +LVVSRNLDVRRS++G G++NA+PD AL+RAGTQ APA
Sbjct: 239 VLVVSRNLDVRRSLTGTGTTNAKPDAALKRAGTQTAPA 276