Pairwise Alignments

Query, 280 a.a., Flagellar motor protein from Pseudomonas stutzeri RCH2

Subject, 275 a.a., chemotaxis motB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 1e-27
 Identities = 74/273 (27%), Positives = 134/273 (49%), Gaps = 25/273 (9%)

Query: 3   RRRAPEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSLVGVFNQVDRS 62
           +++  +  ENHERWL+SYADF+TLLFA FVV+YS +  ++ + K + + L+   +++   
Sbjct: 2   KKKKVDPPENHERWLISYADFMTLLFALFVVLYSFAMSDKNEAKFMVEGLIDSLSKIGLI 61

Query: 63  VKP-----IPIG-------------EERPRTTEPDVSQVDDPAAQSVLSGEPVFDPLERI 104
             P      P G             +  P+  E   +      + + L+     D + + 
Sbjct: 62  STPAVNALAPGGTSILEPNTVTSAVDAEPKLIETATTAPSTSESNNDLTNAKSNDTIRKY 121

Query: 105 AQSMRETFGELIANEQLTVR--GNELWIEIELNSSLLFPSGDALPNDHAFALIEKVAGIL 162
            + +       I N+++ +    + L I I  N++  F SG A        LI+K+  ++
Sbjct: 122 KEIISAKLKNEIENQEVEIDEVSDNLIIRIGDNNT-FFASGSAFIQPKFIPLIDKIGEVI 180

Query: 163 APFDNPIHVEGFTD-NLPISTDKFPTNWELSAARAGSVVRMLAA-QGVDPSRLAAVGYGE 220
           A     + + G TD  LP+  + +  NW+LS+ RA +VVR++   +GV+PSR+   G  +
Sbjct: 181 ASVPGRVVIAGHTDATLPM--EIYADNWDLSSLRATAVVRIMTKNKGVNPSRIIVQGLAD 238

Query: 221 FQPVADNATAAGRARNRRVILVVSRNLDVRRSV 253
            QP   N T   R +NRR+ +++++   V   +
Sbjct: 239 TQPRFQNDTPEHRQKNRRIEIILNQGNTVESHI 271