Pairwise Alignments

Query, 280 a.a., Flagellar motor protein from Pseudomonas stutzeri RCH2

Subject, 308 a.a., sodium-driven polar flagellar protein PomB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.0 bits (214), Expect = 4e-22
 Identities = 75/282 (26%), Positives = 121/282 (42%), Gaps = 54/282 (19%)

Query: 16  WLVSYADFITLLFAFFVVMYSISSINEGKYKILSDSL---VGVFNQVDRSVKPIPIGEE- 71
           WL ++AD ++LL  FFV++ S S ++  KYK ++ S+    GV N+V+  VK IP G   
Sbjct: 14  WLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVE--VKDIPKGTSV 71

Query: 72  ---RPRTTEPDVSQVDDPAAQSVLSGEPVFD----------------------------- 99
                R   PD + ++    Q+    EPV D                             
Sbjct: 72  IALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQRGGEASATAQ 131

Query: 100 ------------PLERIAQSMRETFGEL---IANEQLTVRGNELWIEIELNSSLLFPSGD 144
                         ++I Q +++   EL   IA+  + +      I I +     F SG 
Sbjct: 132 ETEDAVKAEAAAAQDKINQQVKKMAQELNQEIADGAIEIESLGQQIIIRIREKGSFASGS 191

Query: 145 ALPNDHAFALIEKVAGILAPFDNPIHVEGFTDNLPISTDKFPTNWELSAARAGSVVR-ML 203
                    ++  V  +L      I V G+TD++ IS + + +NW+LS+ RA +V   +L
Sbjct: 192 GFLQPRFKPVVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVLL 251

Query: 204 AAQGVDPSRLAAVGYGEFQPVADNATAAGRARNRRVILVVSR 245
             +G DP R+  VG     P+  N +   RARNRRV + + +
Sbjct: 252 QVKGFDPKRMKVVGMASNNPIVPNDSPDNRARNRRVEIAIEQ 293