Pairwise Alignments

Query, 429 a.a., flagellar biosynthetic protein FlhF from Pseudomonas stutzeri RCH2

Subject, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 9/208 (4%)

Query: 211 VIALVGPAGVGKTTTLAKLAARYVLKYGAQNIALVSMDNYRIGAQEQLKTLGRILDVPVL 270
           VI L+G  G GKTT+ AKL ARY+ K G +   L++ D YR  A +QLK L   ++VP+ 
Sbjct: 102 VILLIGIQGSGKTTSAAKL-ARYIQKKGLRP-GLIAADVYRPAAYQQLKQLSEKINVPLF 159

Query: 271 QID-----PSQSLSKTLAPLARKRVILIDTAGLPASDPTLRMQLEALSDRGVKSKNYLVL 325
             +     P +   + +  L +  VI+IDTAG    +  L  +++ + D    ++  LV+
Sbjct: 160 GDETRTKTPVEITKEGMEKLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVI 219

Query: 326 AATSQSQVLKAAWHNYRRCGLAGCIL-TKLDEAGSLGDVLGLTISQHLPIAYLADGPRIP 384
             T   Q    A          G IL TKLD +   G  L      + PI ++  G  + 
Sbjct: 220 DGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGV- 278

Query: 385 DDLHLPRSHQLVSRAVSLQSGEEPSEET 412
           D+L      + +SR + L   +   E+T
Sbjct: 279 DNLEQFDPKKFISRILGLGDLDSLLEKT 306