Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

 Score = 1976 bits (5119), Expect = 0.0
 Identities = 990/1144 (86%), Positives = 1072/1144 (93%), Gaps = 3/1144 (0%)

Query: 3    VLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFA 62
            VLRLP LPAA+GKQHWGNLPGAALSLAIAEAAS AKRFTLLLTADSQSAERL++EL+FFA
Sbjct: 3    VLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFA 62

Query: 63   PGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRF 122
            P LPVLHFPDWETLPYD+FSPHQDI+SQRI++LY+LPELSHGVLVVPITTALHRLAP +F
Sbjct: 63   PDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTQF 122

Query: 123  LLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRI 182
            LLGSSLVLD+GQKLDVEQMR RLEA+GYRCVDTVYEHGEFAVRGALIDLFPMGS LPYRI
Sbjct: 123  LLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRI 182

Query: 183  DLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRC 242
            DLFDDEIETLRTFDPENQRSIDKV+SIRLLPA+EFPL+K+AVT F+ARFRERFDVDFRRC
Sbjct: 183  DLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFRRC 242

Query: 243  PIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRY 302
            PI+QDLS+GITPAGIEYYLPLF+EET+TLFDYLP+D+QVFSLPGIEQAAE FW+DVRNRY
Sbjct: 243  PIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRY 302

Query: 303  EERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAI 362
            EERRVDP RPLLPPAELF+PVEDCFARLK WPRVVASQQDVE+G+GRERF A+ALP+LAI
Sbjct: 303  EERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARALPDLAI 362

Query: 363  ESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQ 422
            E+KA++PL  L  FL+++PGRVLFTAESAGRREVLLELL RLKLRP+ VD W DF+A   
Sbjct: 363  EAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAGKD 422

Query: 423  RLAITIAPLDEGLQLDD--VALVAESPLFGQRVMQRRRREKSRDGGEN-VIKNLTELREG 479
            RLAITIAPL++GL LDD  +ALVAESPLFGQRVMQRRRREK  D   + VIKNLTELREG
Sbjct: 423  RLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELREG 482

Query: 480  SPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALA 539
            +PVVHIDHGVGRY GL TLEI+ QA EFL L+YAE AKLYVPVA+LHLIARYTGSDDALA
Sbjct: 483  APVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALA 542

Query: 540  PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFE 599
            PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAF DP+ DYETF+AGFPFE
Sbjct: 543  PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFPFE 602

Query: 600  ETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTL 659
            ET DQQ  I+AVR D+L+ KPMDRLVCGDVGFGKTEVAMRAAFIAVHGG+QV +LVPTTL
Sbjct: 603  ETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTL 662

Query: 660  LAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKF 719
            LAQQHYNSFRDRFADWPV VEVMSRFKS KEV  A+A+LAEGKIDI+IGTHKLLQDDVKF
Sbjct: 663  LAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKF 722

Query: 720  SNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPP 779
             +LGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNM+++GMRDLSIIATPP
Sbjct: 723  KSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPP 782

Query: 780  ARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAI 839
            ARRLSVRTFVMEQ  + +KEALLRELLRGGQVYYLHNDVKTIEKCAADL  LVPEAR+ I
Sbjct: 783  ARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGI 842

Query: 840  GHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLR 899
            GHGQMRER+LEQVMSDFYHKRFNVL+ASTIIETGIDVPSANTIIIERADKFGLAQLHQLR
Sbjct: 843  GHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLR 902

Query: 900  GRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLG 959
            GRVGRSHHQAYAYLLTP R+ +T DA+KRLEAIAN QDLGAGFVLAT+DLEIRGAGELLG
Sbjct: 903  GRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLG 962

Query: 960  EGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDV 1019
            +GQSGQIQAVGFTLYMEMLERAVK+IRKGEQPNL+QPLGGGPEINLR+PALIPEDYLPDV
Sbjct: 963  DGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDV 1022

Query: 1020 HARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDA 1079
            HARLILYKRIA+A+DE+GLK+LQVEMIDRFGLLPEPTKNLVR TLLKL+AE+LGI K+D 
Sbjct: 1023 HARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKVDG 1082

Query: 1080 GPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLE 1139
            GP GGRIEF A T VDP+VLIKLIQ QPKRYKFEGAT+FKF VPMER EERFNT+EAL E
Sbjct: 1083 GPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNTVEALFE 1142

Query: 1140 RLAP 1143
            RL P
Sbjct: 1143 RLTP 1146