Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E3

 Score = 1987 bits (5147), Expect = 0.0
 Identities = 996/1144 (87%), Positives = 1070/1144 (93%), Gaps = 3/1144 (0%)

Query: 3    VLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFA 62
            VLRLP LPAA+GKQHWGNLPGAALSLAIAEAAS AKRFTLLLTADSQSAERL++EL+FFA
Sbjct: 3    VLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFA 62

Query: 63   PGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRF 122
            P LPVLHFPDWETLPYD+FSPHQDI+SQRI++LY+LPELSHGVLVVPITTALHRLAP +F
Sbjct: 63   PDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPTKF 122

Query: 123  LLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRI 182
            LLGSSLVLD+GQKLDVEQMR RLEA+GYRCVDTVYEHGEFAVRGALIDLFPMGS LPYRI
Sbjct: 123  LLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRI 182

Query: 183  DLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRC 242
            DLFDDEIETLRTFDPENQRSIDKVES+RLLPA+EFPL+KEAVT F+ARFRERFDVDFRRC
Sbjct: 183  DLFDDEIETLRTFDPENQRSIDKVESVRLLPAKEFPLQKEAVTRFKARFRERFDVDFRRC 242

Query: 243  PIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRY 302
            PI+QDLS+GITPAGIEYYLPLF++ET+TLFDYLP+D+QVFSLPGIEQAAE FW+DVRNRY
Sbjct: 243  PIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRY 302

Query: 303  EERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAI 362
            EERRVDP RPLLPPAELF+PVEDCFARLK WPRVVASQQDVE+G+GRERF A  LP LAI
Sbjct: 303  EERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGVGRERFPATPLPNLAI 362

Query: 363  ESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQ 422
            E+KA++PL  L  FL+ + GRVLFTAESAGRREVLLELL RLKLRP+ VD W DF+AS +
Sbjct: 363  EAKANQPLQALSNFLDGFSGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVASKE 422

Query: 423  RLAITIAPLDEGLQLDD--VALVAESPLFGQRVMQRRRREKSRDGGEN-VIKNLTELREG 479
            RLAITIAPLDEGL LD+  +AL+AESPLFGQRVMQRRRREK  D   + VIKNLTELREG
Sbjct: 423  RLAITIAPLDEGLVLDNPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELREG 482

Query: 480  SPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALA 539
            +PVVHIDHGVGRY GL TLEIE QA EFL L+YAE AKLYVPVA+LHLIARYTGSDDALA
Sbjct: 483  APVVHIDHGVGRYLGLATLEIENQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDALA 542

Query: 540  PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFE 599
            PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAF DP+ DY TF+AGFPFE
Sbjct: 543  PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFPFE 602

Query: 600  ETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTL 659
            ETPDQQ  IDAVRED+L+ +PMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQV +LVPTTL
Sbjct: 603  ETPDQQTTIDAVREDMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPTTL 662

Query: 660  LAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKF 719
            LAQQHYNSFRDRFADWPV VEVMSRFKS KEV  A+A+LAEGKIDI+IGTHKLLQDDVK 
Sbjct: 663  LAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDVKI 722

Query: 720  SNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPP 779
             NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNM+++GMRDLSIIATPP
Sbjct: 723  KNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPP 782

Query: 780  ARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAI 839
            ARRLSVRTFVMEQ  + +KEALLRELLRGGQVYYLHNDVKTIEKCAADL  LVPEAR+ I
Sbjct: 783  ARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGI 842

Query: 840  GHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLR 899
            GHGQMRER+LEQVMSDFYHKRFNVL+ASTIIETGIDVPSANTIIIERADKFGLAQLHQLR
Sbjct: 843  GHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLR 902

Query: 900  GRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLG 959
            GRVGRSHHQAYAYLLTP R+ +T DA+KRLEAIAN QDLGAGFVLAT+DLEIRGAGELLG
Sbjct: 903  GRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLG 962

Query: 960  EGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDV 1019
            +GQSGQIQAVGFTLYMEMLERAVK+IRKGEQPNL+QPLGGGPEINLRLPALIPEDYLPDV
Sbjct: 963  DGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLPDV 1022

Query: 1020 HARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDA 1079
            HARLILYKRIA+A DEDGLK+LQVEMIDRFGLLPEPTKNLVR+TLLKLQAE+LGI K+D 
Sbjct: 1023 HARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRMTLLKLQAEQLGIKKVDG 1082

Query: 1080 GPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLE 1139
            GPQGGRIEF A T VDP+VLIKLIQ QPKRYKFEGAT+FKF VPMERPEERFNT+EAL E
Sbjct: 1083 GPQGGRIEFGAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEALFE 1142

Query: 1140 RLAP 1143
             L P
Sbjct: 1143 HLTP 1146