Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1291 bits (3342), Expect = 0.0
 Identities = 651/1147 (56%), Positives = 859/1147 (74%), Gaps = 5/1147 (0%)

Query: 2    SVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFF 61
            S+L L     A  K+  GNL GA+L+LAIAE A+     TLL   D Q+A +L  E+  F
Sbjct: 5    SLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF 64

Query: 62   APGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKR 121
            +     L FPDWETLPYD FSPHQDI+S RIS LYQLP L+ G+ +VP++T L R +P+ 
Sbjct: 65   SHSEVAL-FPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRD 123

Query: 122  FLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYR 181
            FLL  +L++  G    ++++RL+LE + YR VD V+  GE+A RG+++DLFPMGS  P+R
Sbjct: 124  FLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFR 183

Query: 182  IDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRR 241
            ID FDDEI+T+RTFDP+NQRSI +++ IRLLPA EFP    A+  FR R+R+RF+     
Sbjct: 184  IDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREP 243

Query: 242  CPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNR 301
              +Y  +S G  PAGIEY+ PLF+E + TLFDYLP +SQ+  +  +E+A +QF +DV  R
Sbjct: 244  ESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYR 303

Query: 302  YEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELA 361
            Y++R +DP RPLLPP EL++  ++ FA  K  P+V  +   +E   GR     Q LP LA
Sbjct: 304  YDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLA 363

Query: 362  IESKASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASD 421
            +E +  EPL  LRQF E + G+++F+ ES GRRE LLELL R+KLRPQ  + ++      
Sbjct: 364  VEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQT 423

Query: 422  QRLAITIAPLDEGLQLDD--VALVAESPLFGQRVMQRRRRE--KSRDGGENVIKNLTELR 477
            ++ ++ +   + G    D  VAL+ ES L G RV+QRRR++  K+    + VI+NL EL+
Sbjct: 424  EKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELK 483

Query: 478  EGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDA 537
             G PVVHIDHG+GRY GL TLE  G   E+++L+Y  EAKLYVPV+SL+LI+RY+G  + 
Sbjct: 484  PGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEE 543

Query: 538  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFP 597
             A LH+LG E W KA+RKAAE+VRDVAAELLD+YA+R  + G+ F   +  Y TF A FP
Sbjct: 544  AAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFP 603

Query: 598  FEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPT 657
            FEET DQ  AI+AV  D+  AK MDRLVCGDVGFGKTEVAMRAAF+A   G+QV VLVPT
Sbjct: 604  FEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPT 663

Query: 658  TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDV 717
            TLLAQQH+ +FRDRFA+ P+RVEV+SRFKSAKE +  + ++A+GK+DIL+GTHKLL  ++
Sbjct: 664  TLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723

Query: 718  KFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIAT 777
            +F++LGL+I+DEEHRFGVRQKE++KA+R++VDILTLTATPIPRTLNM+++GMRDLSIIAT
Sbjct: 724  RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783

Query: 778  PPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARV 837
            PPARRL+++TFV + +++VI+EA+LRE++RGGQVY+LHN V+TI+K AADL+ LVPEAR+
Sbjct: 784  PPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARI 843

Query: 838  AIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQ 897
             + HGQMRER+LE+VM+DFYH+RFN+LV +TIIETGIDVP+ANTII++RAD  GLAQLHQ
Sbjct: 844  TVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQ 903

Query: 898  LRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGEL 957
            LRGRVGRSHHQAYAYLLTP  KA+T DA KRLEAIA+ +DLGAGF LATHDLEIRGAGEL
Sbjct: 904  LRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963

Query: 958  LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLP 1017
            LGE QSGQIQ+VGFTLYMEMLE+AV+A++ G++P L+  L    E+ +RLPAL+PE+Y+P
Sbjct: 964  LGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIP 1023

Query: 1018 DVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKI 1077
            D++ RL +YK+IA+ A +D L EL+VE+IDRFG LP+   NL+ +  LKL A +L + KI
Sbjct: 1024 DINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKI 1083

Query: 1078 DAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEAL 1137
            +A  +GG +EF  +  ++P+ L+KL+QSQPK    +G T  KF +P+     R   +  +
Sbjct: 1084 EAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADM 1143

Query: 1138 LERLAPN 1144
            L+    N
Sbjct: 1144 LKNFQQN 1150