Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  769 bits (1985), Expect = 0.0
 Identities = 455/1156 (39%), Positives = 673/1156 (58%), Gaps = 44/1156 (3%)

Query: 19   GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPVLHFPDWETLPY 78
            G +P  A +L +AE A        +L+ D Q    L++ L F AP +PVL  P W+ LPY
Sbjct: 22   GPVPTGAEALVLAELARAGAPVAYILS-DGQKVADLEQVLGFVAPDIPVLTLPGWDCLPY 80

Query: 79   DIFSPHQDIVSQRISALYQLPELSH------GVLVVPITTALHRLAPKRFLLGSSLVLDV 132
            D  SP  D  ++R++AL  L  ++H       +++V I  AL R++P+  +   +     
Sbjct: 81   DRVSPSADTSARRLAALSAL--IAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARP 138

Query: 133  GQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDDEIETL 192
            G ++ ++ +  RLE  G+  V TV E GEFAVRG ++D++  GS  P R+D F D +E +
Sbjct: 139  GNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAI 198

Query: 193  RTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQDLSTGI 252
            R+FDP +QR+I +V S+ L P  E  L  E ++ FR ++   F    R   +YQ +S G 
Sbjct: 199  RSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSEGR 258

Query: 253  TPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQF-----WSDVR------NR 301
              AG+E++LPLFY+   T+FDYL     V      E AAE+      + D R       +
Sbjct: 259  RYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYYDARLASASPGK 318

Query: 302  YEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELA 361
             +  +  P +P+ PP  L++  +     L     V  S      G  R+  N +A   L 
Sbjct: 319  SQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQGLR 377

Query: 362  IESKASEPLGK----------LRQFLESYP--GRVLFTAESAGRREVLLELLAR---LKL 406
                A E              ++   E      +V+ +  + G  + LL++LA      +
Sbjct: 378  WAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLANI 437

Query: 407  RPQEVDGWTDFLASDQRLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGG 466
            RP +       L   +  A  +  L+ G +  D+ ++ E  + G R+++R +R K    G
Sbjct: 438  RPVKALSDIGSLKPGEA-ASAVLSLEAGFETGDLVVIGEQDILGDRLVRRSKRRKR---G 493

Query: 467  ENVIKNLTELREGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLH 526
             + I  +T L EGS VVH +HG+GR+ GL T+E  G   + L L YA++AKL++PV ++ 
Sbjct: 494  ADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFLPVENIE 553

Query: 527  LIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQ 586
            L++RY GS+   A L +LG   WQ  K K  +++ D+A  L+ I A R  R         
Sbjct: 554  LLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAPVLAAQD 612

Query: 587  VDYETFAAGFPFEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVH 646
              Y+ FAA FP++ET DQ  +IDAVR+DL   +PMDRLVCGDVGFGKTEVA+RAAFIA  
Sbjct: 613  GVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRAAFIAAM 672

Query: 647  GGRQVGVLVPTTLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDIL 706
             G QV V+VPTTLLA+QH+ +F DRF   P+R++  SR   +K++     E+AEGK DI+
Sbjct: 673  NGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAEGKTDIV 732

Query: 707  IGTHKLLQDDVKFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSI 766
            +GTH LL   +KF+NLGL+IIDEE  FGV+ KE+LK L+++V +LTL+ATPIPRTL +++
Sbjct: 733  VGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPRTLQLAL 792

Query: 767  AGMRDLSIIATPPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAA 826
             G+R+LS+I TPP  R++VRTF+      VI+E L+RE  RGGQ +Y+   V  + +   
Sbjct: 793  TGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSDLPEIHD 852

Query: 827  DLQALVPEARVAIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIER 886
             L++ VPE +VA+ HGQM   +LE +M+ FY  R++VL+++TI+E+G+DVP+ANT+I+ R
Sbjct: 853  FLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHR 912

Query: 887  ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLAT 946
            AD FGLAQL+QLRGRVGRS  +A+A    P  K +T  A++RL+ + +   LGAGF LA+
Sbjct: 913  ADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGAGFQLAS 972

Query: 947  HDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLR 1006
            HDL+IRGAG LLGE QSG I+ VGF LY +MLE AV  + KGE+       G  P+I++ 
Sbjct: 973  HDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEL-KGEEE--IHDTGWSPQISVG 1029

Query: 1007 LPALIPEDYLPDVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLK 1066
             P +IPE+Y+PD++ RL LY+R+    D   +     E+IDRFG LP   ++L+++  +K
Sbjct: 1030 TPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLLKIVYVK 1089

Query: 1067 LQAEKLGITKIDAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMER 1126
                   + K+DAGP+G  ++F      +P  L+  I  Q    K        FQ  +  
Sbjct: 1090 SLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFFQRELAT 1149

Query: 1127 PEERFNTLEALLERLA 1142
            PE+R +    ++ +LA
Sbjct: 1150 PEKRLSGAAMVMTQLA 1165