Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score =  761 bits (1966), Expect = 0.0
 Identities = 447/1141 (39%), Positives = 652/1141 (57%), Gaps = 32/1141 (2%)

Query: 24   AALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPVLHFPDWETLPYDIFSP 83
            A L+ A+A           ++  D    ++L   L FFAP L VL FP W+  PYD  SP
Sbjct: 33   ADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFFAPDLEVLQFPAWDCQPYDRVSP 92

Query: 84   HQDIVSQRISALYQLPELSHG----VLVVPITTALHRLAPKRFLLGSSLVLDVGQKLDVE 139
            H  I++QR++ L +L  L+      +++  +  A+ R+  +  +   +L +  G  + ++
Sbjct: 93   HAGILAQRVTTLAKLSRLTGSDKPLIVLTTVNAAVQRVPVREIIAAQALSVAPGNVVPMD 152

Query: 140  QMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDDEIETLRTFDPEN 199
             +   LE  GY    TV E GE+AVRG ++DLFP G   P R D F D++E++RTFD E 
Sbjct: 153  SIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAGLDQPVRFDFFGDQLESIRTFDAET 212

Query: 200  QRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQDLSTGITPAGIEY 259
            QR++  +  + L+P  EF L  E +  FR  +   F        +Y  +S G    G+E+
Sbjct: 213  QRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGAPHPDDQLYAAVSEGRRHPGMEH 272

Query: 260  YLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERRVDPERP------- 312
            +LPLF E   TLFDYL + + V   P  E AA + +  + + Y+ RR   E+P       
Sbjct: 273  WLPLFQERMDTLFDYL-KGTPVAIEPQSEDAARERFKQIADYYDARREAMEQPGSGAIYK 331

Query: 313  LLPPAELFMPVEDCFARL------KLWPRVVASQQDVESGIGRERFNAQALPELAIES-K 365
             LPP  L++   +  ARL      +L P  +          G  R      PE A  +  
Sbjct: 332  PLPPDRLYLTDSEWTARLEGVALARLTPFALPDDTSDVIDAGA-RAGRNFAPERADSNVN 390

Query: 366  ASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRP-QEVDGWTDFLASDQR- 423
              E L      L++   +V+    S G R+ +  +L   KL     V+ W    A+ +  
Sbjct: 391  VFETLVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKLVALTSVNSWRTVQATPRNE 450

Query: 424  LAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVV 483
              + +  L+ G + D  A++ E  + G R++++R+  K  D   N I  +T L  G  VV
Sbjct: 451  TMLAVVGLESGFETDAFAVITEQDVLGDRLVRQRKASKKLD---NFISEVTSLSTGDIVV 507

Query: 484  HIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHR 543
            H++HG+GR+ GL TLE+ G   + + L YA + KL++PV ++ L++RY GSD     L +
Sbjct: 508  HVEHGIGRFVGLQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRY-GSDGTSVELDK 566

Query: 544  LGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPD 603
            LG   WQ  K K   ++R +A EL+ + A R  RE          Y+ F A FP++ET D
Sbjct: 567  LGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPYDETED 626

Query: 604  QQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQ 663
            Q AAI+A   DL    PMDRLVCGDVGFGKTEVA+RAAF     G+QV V+VPTTLLA+Q
Sbjct: 627  QLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQ 686

Query: 664  HYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLG 723
            H  +F +RF  +PV V   SR  SAKE+      +A+G  DI++GTH LL   +KF +LG
Sbjct: 687  HAKTFTERFRGFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIKFKDLG 746

Query: 724  LVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRL 783
            LVI+DEE  FGV  KE+LK LRSEV +LTL+ATPIPRTL +++ G+RDLSIIA+PP  RL
Sbjct: 747  LVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASPPVDRL 806

Query: 784  SVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQ 843
            +VRTFV      +I+EALLRE  RGGQ +Y+   +  + +    L   VPE +VA+ HGQ
Sbjct: 807  AVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKHVPEMKVAVAHGQ 866

Query: 844  MRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG 903
            M    +E +MS FY  +F++L+++TI+E+G+D+P+ANT+I+ RAD FGLAQL+QLRGRVG
Sbjct: 867  MPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVG 926

Query: 904  RSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQS 963
            RS  +AYA L T  +  +T  A++RL+ + + + LGAGF LA+HDL+IRGAG LLGE QS
Sbjct: 927  RSKLRAYA-LFTLPQHNITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQS 985

Query: 964  GQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGG--GPEINLRLPALIPEDYLPDVHA 1021
            G I+ VGF LY +MLE A+  ++ G    +++P+     P+I + +P LIP+D++ D+  
Sbjct: 986  GHIKEVGFELYQQMLEEAITNLKAG---IVDEPVADRWSPQITIGMPVLIPDDFVADLSV 1042

Query: 1022 RLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGP 1081
            RL LY+R+A+   ++ +     E+ DRFG LP+  + L ++  +K    +  + K+DAGP
Sbjct: 1043 RLSLYRRLADLDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRRANVEKVDAGP 1102

Query: 1082 QGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERL 1141
            +G  I F  +    P  L+  I+      K        F    E PEER      +L++L
Sbjct: 1103 KGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEERLMGTTDILKQL 1162

Query: 1142 A 1142
            A
Sbjct: 1163 A 1163