Pairwise Alignments

Query, 450 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pseudomonas stutzeri RCH2

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (294), Expect = 5e-31
 Identities = 108/384 (28%), Positives = 172/384 (44%), Gaps = 51/384 (13%)

Query: 97  CGGCNLQHAPIADQLALKQHTLAEQLARVADLQPEAWAEPLVGPAFGYRRRARLAVRWDV 156
           C  C+L   P ++Q+  K   L E +A   D+Q   W  P+      +R +A++ V   +
Sbjct: 11  CTSCHLCAQPYSEQVTNKDQQLRELIAPATDVQ---WLPPVTSADTAFRNKAKMVV---L 64

Query: 157 KSKHLDIGFRASSSQEIVSIRECPVLVQPLQTLLPGLLTALRD----------------- 199
            + H  I     +  + +S+  CP+  QP+Q LL  L   +R                  
Sbjct: 65  GAAHAPILGIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKF 124

Query: 200 --LSKPQAIGHVEL-FSGTAEAVLIRHT-------AALPESDLARLRSFATAHRAQLWWQ 249
             L++ +  G   L F   + AVL R         AA P  ++  + +    H A+L  +
Sbjct: 125 ILLTRSENSGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISV-NIQPVHMARL--E 181

Query: 250 GEGEPQPDDCAASLGYRLDAWDLELAWRPGDFVQVNAPVNDAMVAQALEWLDAGKDEAVL 309
           GE E    +  + L +  D   + +  RP  F Q N  V + + A A  W+       + 
Sbjct: 182 GEEEIFLTETQSLLEHFND---VPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMW 238

Query: 310 DLFCGLGNFSLPLARSGARVVGVEGVEAMVARAQENAQRNALEHAHFYRADLSKPLADAP 369
           DLFCG+G F+L  A     V G+E     +A AQ +AQ   +++  F   D +K      
Sbjct: 239 DLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAK------ 292

Query: 370 WAGSGFAA---VLLDPPRDG-ALEIVRQMSMLKAQRVVYVSCNPATLARDARELASQGYR 425
           ++ S  +A   VL++PPR G   E+  Q+  L  + ++Y SCNP T+ +D  EL+S  Y+
Sbjct: 293 FSQSQMSAPELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS--YQ 350

Query: 426 LKRAGVLDMFPQTAHVEAMALFER 449
           + R    DMFP T H E + L  R
Sbjct: 351 MIRVQWFDMFPHTDHAEVLTLLVR 374