Pairwise Alignments

Query, 660 a.a., tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain from Pseudomonas stutzeri RCH2

Subject, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

 Score =  416 bits (1069), Expect = e-120
 Identities = 262/673 (38%), Positives = 368/673 (54%), Gaps = 33/673 (4%)

Query: 9   TFQHAELDWDENGLPQSRQYGDVYFSRASGLAETEHVFLAQNELARRFAALQSNQHLVIG 68
           +  HA+L W++ G P S Q+ DVYFS  +GLAET +VFL QN L +R+      +  VI 
Sbjct: 6   SISHAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHN-DDQRRFVIA 64

Query: 69  ETGFGTGLNFLCAWQLF----ERTADAQA-HLHFVSVEKHPLNHDDMQRALALWPELQPQ 123
           ETGFGTGLNFL  WQ F    E   DA+   LHF+S EK+PL+  D+ +A   WPEL   
Sbjct: 65  ETGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQF 124

Query: 124 AAQLLQQYVALNPGFQRFVFAGGRVVLTLLIGDVLDCLPSLDAR----VDAWFLDGFAPA 179
           A +L + Y    P  QR V   G V L L  GD+ DCLP +  +    VDAWFLDGFAP+
Sbjct: 125 AQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPS 184

Query: 180 KNPQMWQPALFAELARLSAPGATLGTFTSAGFVRRGLVEAGFDMQRVPGYGHKREILRGR 239
           KNP+MW   LFA +A+L+  G T  TFTSAGFVRRGL++AGF M++V G+G KRE++ G 
Sbjct: 185 KNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAGS 244

Query: 240 LLAVANPVSDKPWFA-RPNHGITERRAVVIGAGLAGCATAASLAARGWQVSVLERHAEAA 298
           L       +  P F     HG+ E    +IG G+A    A +LA RG  V++     + A
Sbjct: 245 LSEKVPYTNIAPEFRFEATHGLQE--VAIIGGGIASATLATTLARRGVAVTLYCADEKPA 302

Query: 299 QEGSGNPQGVLYLKLSAHGTALSRLVVSGFSYTRRLL--ANLQAGQDWQACGVLQLCYDD 356
           Q  SGN QG +Y  LS    A+SR+    F + R+ +  A  Q   D   CGV QL +D+
Sbjct: 303 QGASGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDE 362

Query: 357 KERERQAELAEA-FPASLVHPLSHEAAEALAGVRLPAGGLFYPDAGWANPPALCH---WL 412
           K  ++   + E  FP  LVH LS E      GV +    + YP  GW +P  L      L
Sbjct: 363 KATDKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHL 422

Query: 413 LQQPGIELLQHH----EALELQRNGQSWQVLAGEKVLADAPVVVLAGAADAARFSQSAWL 468
           L+Q G +L  H+    +AL  Q   Q WQ+ +G+ +++   VV+ +G       SQ+A L
Sbjct: 423 LEQQG-KLTAHYQTPIDALTWQPETQLWQLRSGDTLMSHQCVVIASG-HQFDSLSQTAEL 480

Query: 469 PLKRIRGQISCLPANAESGQLRTVLCAKGYVAP--PRDGTHTLGASFNFQQTDDAPSIAE 526
           PL +++GQ+S +P      ++ +VLC  GY+ P   ++G H +GAS++ Q  D   +  +
Sbjct: 481 PLGKVKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHLD---ATFD 537

Query: 527 HQANLEMLEQISSDLYQRLQADPQQTAALQGRVAFRCTSPDYLPLIGPLAEPQAFADTYA 586
            QA  E  +++   L ++        +  Q R   RC S D+LP +G + E     + Y 
Sbjct: 538 PQAQHENAQKLIHCLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQYR 597

Query: 587 ALAKNARQSQHAACPWLEGLYVNTAHGSRGMISAPLSGELLAAWLNDEPLPLPREVAEAC 646
            LA+  +    A  P    LY     GSRG+ SAPL  ELLA+ +  +P+PL  ++ E  
Sbjct: 598 DLAQQHQAEPIALYP---QLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQL 654

Query: 647 HPNRFLLRKLIRG 659
           HP+R  +RKL +G
Sbjct: 655 HPSRMWVRKLRKG 667