Pairwise Alignments

Query, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  299 bits (765), Expect = 1e-85
 Identities = 177/446 (39%), Positives = 256/446 (57%), Gaps = 11/446 (2%)

Query: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61
           F    L E LL+A+  L +  PTPVQ  AIP  L GRDL   AQTG+GKTA F +P+L  
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62

Query: 62  LI--GDAVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVLR 119
           L   G  V    VRALIL+PTRELA+Q  + V ++++   + +  + GG     Q   LR
Sbjct: 63  LAMEGPKVTSNSVRALILVPTRELAEQVHESVRQYAENLPLSTYAVYGGVSINPQMMKLR 122

Query: 120 KVPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQT 179
           K  D+L+ TPGR+++      L    ++ L+LDEADRMLD+GF+E++  +     K++QT
Sbjct: 123 KGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKRQT 182

Query: 180 LLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLLA 239
           LLFSAT    A+RE+   +L DPL ++++  +  +   +Q ++T +     E  +H LL 
Sbjct: 183 LLFSATFS-DAIRELAGKMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKAELFIH-LLR 240

Query: 240 NETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVA 299
              +K+ ++F  TR   D L  +L    V A  +HGDK Q  R+ A+DR K   V++LVA
Sbjct: 241 KNRWKQVLVFAKTRNGVDALVEKLQGLSVNADGIHGDKPQATRQRALDRFKASEVQILVA 300

Query: 300 TDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIE 359
           TDVAARGLDIE L LV+NFD+P   ++Y+HRIGRTGRAGA G AISL+C ++ N +S+IE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADEVNQLSAIE 360

Query: 360 RYLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKKDDKKKDDKKKAKPTAKRPKNAK 419
              +Q     + +  +  +  P +  ASG+    K KK  K K      +   K  ++  
Sbjct: 361 MLTRQTLTRHMEQDFEPEHRVP-DTDASGQVV-KKPKKPKKPKVSGGGKRNLGKWVESGD 418

Query: 420 REAPSPVVSQDGMAPL-----KRKKP 440
             AP P V      P+     +++KP
Sbjct: 419 ASAPEPSVKPVRKVPVFNTGPRKRKP 444