Pairwise Alignments

Query, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 456 a.a., DEAD/DEAH box helicase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  309 bits (791), Expect = 1e-88
 Identities = 178/443 (40%), Positives = 259/443 (58%), Gaps = 11/443 (2%)

Query: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61
           F  F+L +RL++++  +    PTP+Q  AIP AL G+DL  +++TGSGKT AF+LP + R
Sbjct: 3   FSDFSLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQR 62

Query: 62  LIGD-AVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVLRK 120
           +I   A+ + D R LILLPTRELAQQ   ++      T  ++  + GGE+F  QA  L +
Sbjct: 63  VISSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKALAR 122

Query: 121 VPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECA-KRQQT 179
            P  ++ TPGR+ +HL    L L  +E+L+LDEADRMLD+GFA  ++ +      +R+QT
Sbjct: 123 EPHFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRRQT 182

Query: 180 LLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLLA 239
           L+FSAT     + E+ A +L++P H+ ++ +        QQI+ A+   HKE L+  LL+
Sbjct: 183 LMFSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEALLERLLS 242

Query: 240 NETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVA 299
              +++ +IFT TR   +RL   L  +G     L G+  Q  R   +D       ++LV 
Sbjct: 243 GNNFRQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVT 302

Query: 300 TDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIE 359
           TDVA+RGLDI  + LV+NFDMP+  +EYVHRIGRTGRAG +G AISL+   DW+    ++
Sbjct: 303 TDVASRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLKVQ 362

Query: 360 RYLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKKDDKKKDDKKKAKPTAKRPKNAK 419
             L++ FE  V++GL+  + G    K   K AG K K   K K      + TA  PK  K
Sbjct: 363 ILLQKTFEFSVLEGLEAKFKGLAP-KRERKDAGAKAKAAGKTK------RQTADAPKGEK 415

Query: 420 REAPSPVVS--QDGMAPLKRKKP 440
           R      ++    G AP+ RKKP
Sbjct: 416 RSRDKRFLTGVDVGDAPMIRKKP 438