Pairwise Alignments

Query, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 450 a.a., ATP-dependent RNA helicase RhlE from Klebsiella michiganensis M5al

 Score =  299 bits (765), Expect = 1e-85
 Identities = 174/453 (38%), Positives = 268/453 (59%), Gaps = 19/453 (4%)

Query: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61
           FD   L+  +L+AVAE  +VEPTP+Q  AIP  L+GRDL  +AQTG+GKTA F LP+L  
Sbjct: 3   FDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQH 62

Query: 62  LIGD---AVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVL 118
           L+     A  R  VRALIL PTRELA Q  + V  +S++  ++S ++ GG     Q   L
Sbjct: 63  LVQKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMMKL 122

Query: 119 RKVPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQ 178
           R   DIL+ TPGR+++  +   + L  VE+L+LDEADRMLDMGF  D++R++ +   ++Q
Sbjct: 123 RSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQ 182

Query: 179 TLLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLL 238
            LLFSAT     ++ +   +L +PL +++ R +  SE    Q++   D   K +L+  ++
Sbjct: 183 NLLFSATFSDE-IKSLAEKLLHNPLEIEVARRNTASEQV-SQLVHFVDKKRKRELLSQMI 240

Query: 239 ANETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLV 298
               +++ ++FT T+  A+ L  +L  +G+++  +HG+K Q  R  A+   K GG++VLV
Sbjct: 241 GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLV 300

Query: 299 ATDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 358
           ATD+AARGLDIE L  V+N+++P   ++YVHRIGRTGRA A G A+SL+C ++  L+  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDI 360

Query: 359 ERYLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKK-------DDKKKDDKKKAKPT 411
           ER LK+      + G    Y    ++KA     G ++++         + +  + + +  
Sbjct: 361 ERLLKKEIPRIALAG----YEPDPSIKAEPIQNGRQQQRGGGGRGGQSQGRGGQGQGRGQ 416

Query: 412 AKRPKNAKREAPSPVVSQDGMAPLKR--KKPTA 442
              P+    EAP    +QDG  P +R  +KP A
Sbjct: 417 QSAPRRTDGEAPK-ARTQDGKPPRRRRPRKPAA 448