Pairwise Alignments

Query, 571 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas stutzeri RCH2

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  668 bits (1724), Expect = 0.0
 Identities = 338/577 (58%), Positives = 433/577 (75%), Gaps = 11/577 (1%)

Query: 1   MRIEPRPLPEQ--LPDLGELPPLLQRLYAARGVTCAEELDKGLARLIPYKQLKGIDAAVE 58
           + I+ RP P+   LPD   + PLL+RLY +RGV+   +L+K    L  +KQL GID AVE
Sbjct: 2   IEIQRRPEPDLSLLPD--HIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVE 59

Query: 59  LLVEALEKRQRILFVGDFDADGATASTVGVLGLRQLGAAHVDYLVPNRFEYGYGLTPEIV 118
           LL  A+ +++RI+ VGDFDADGAT+S + VL LR LG+ +VDYLVPNRFE GYGL+PE+V
Sbjct: 60  LLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVV 119

Query: 119 AVALQREPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGHELPAADAIVNPNQPEC 178
             A++R  ++++TVDNG+SS++GV  AK  GL+V+VTDHHLPG ELP  DA+VNPN  +C
Sbjct: 120 DQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQC 179

Query: 179 AFPSKCIAGVGVIFYVLLALRARLRELDWFVRQGWAEPNLAELLDLVALGSVADVVPLDA 238
           AFPSK +AGVGV FY+++AL   +R+  WF  QG  EP L EL+DLVALG+VADVVPLD 
Sbjct: 180 AFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDD 239

Query: 239 NNRILVHQGLARIRAGRARAGLRAILEVAGRDHRRITSTDLGFILGPRLNAAGRLDDMSL 298
           NNRILVHQGL RIRAG AR G++A++EVA RD RR+ + D GF LGPR+NAAGRLDDMS 
Sbjct: 240 NNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSF 299

Query: 299 GIECLLCEDEALARDMAVQLDELNKDRKSIEQGMQREALAQLKDLPLED---LPFGLCLF 355
           G+E LLC +   AR MA +LD LN+ RK IE+GM++EA+A  + L L D   LP+GL LF
Sbjct: 300 GVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLF 359

Query: 356 EADWHQGVIGILASRLKERYHRPTIAFADAGDGLLKGSARSVPGFHIRDALDAVAAKHPG 415
           + DWHQGVIGILASR+KE+YHRP IAFA+ GDG LKGS RSVPG H+RDALD +  ++PG
Sbjct: 360 QRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPG 419

Query: 416 LISKFGGHAMAAGLSLPQANFGAFAAAFDAEVRRQLCEEDLTGRLLTDGQLSVEEFHLEL 475
           +I KFGGHAMAAGL++ + NF  F   FD  VR +L E  L G +L+DG+L  EEF L  
Sbjct: 420 IILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHT 479

Query: 476 ARALRNAGPWGQHFPEPMFHGVFQLVQQRIVGERHLKLVL----KSECGSLTLDGIAFNV 531
           A  LR  GPWGQ FPEP+F G F+++ Q++VGE+HLKL+L    K    ++ +DGIAFNV
Sbjct: 480 AELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNV 539

Query: 532 DREIWPNPTVRWAELAYKLDVNEYRGQESVQLMVAHI 568
           D   WP+ +V+   LAYKLD+NE+RG +S+QLM+ H+
Sbjct: 540 DLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576