Pairwise Alignments

Query, 234 a.a., DnaA regulatory inactivator Hda from Pseudomonas stutzeri RCH2

Subject, 236 a.a., DNA replication initiation factor (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (536), Expect = 1e-59
 Identities = 111/231 (48%), Positives = 153/231 (66%), Gaps = 3/231 (1%)

Query: 3   PIQLPLGVRLRDDATFANFYPGANAAALGYVERLCSPAAGWSDELIYLWGQAGVGRSHLL 62
           P+QL L V L DD TF ++YP A    L  +  L + A G +++ +YLWG    GR+HL+
Sbjct: 6   PVQLSLPVYLPDDETFNSYYPAAGNDEL--ILSLQASAEGRANKAVYLWGPVKAGRTHLM 63

Query: 63  QAACLRVEERGEQAVYLPLAEVVEYGPALLDNLEQCELVCLDDLDAVAGDAVWEEALFHL 122
            A C R  E    + YLPL         LL+ LEQ +LVC+DD+DA+AG  +WEEALF L
Sbjct: 64  HATCARANELNRSSFYLPLGIHASISTELLEGLEQLDLVCIDDVDAIAGHPLWEEALFDL 123

Query: 123 FNRLRDAGR-RLLLAANGSPRELPVKLPDLKSRLSLALVFQLQQLSDEDKLRALQLRASR 181
           +NR+ +  R  L+++A+ +  +    LPDL SR+   L +QLQ ++DE+KL ALQ RA+ 
Sbjct: 124 YNRVAEHKRCALVVSASATASDAGFALPDLVSRMQWGLTYQLQPMADEEKLAALQRRAAM 183

Query: 182 RGLNLPDDVGRFILTRGSRSMNALFELLDQLDQASLQAQRKLTIPFLKETL 232
           RGL LP+DVGRF+L R +R +  LF++LD+LD+ASL  QRKLTIPF+KE L
Sbjct: 184 RGLQLPEDVGRFLLNRLARDLRTLFDVLDRLDKASLVHQRKLTIPFVKEML 234